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    LOC102597559 UDP-arabinose 4-epimerase 1-like [ Solanum tuberosum (potato) ]

    Gene ID: 102597559, updated on 2-Nov-2023

    Summary

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    Gene symbol
    LOC102597559
    Gene description
    UDP-arabinose 4-epimerase 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum tuberosum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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    Genomic context

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    See LOC102597559 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239064.1 (1159738..1169555, complement)

    NW_006239064.1Genomic Context describing neighboring genes Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase homolog Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase homolog Neighboring gene protein PAT1 homolog 1 Neighboring gene UDP-glycosyltransferase 82A1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006239064.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-glucose 4-epimerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in galactose catabolic process via UDP-galactose IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meristem development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meristem maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-arabinose 4-epimerase 1-like; probable UDP-arabinose 4-epimerase 2; serine/threonine-protein phosphatase 7 long form homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SolTub_3.0 Primary Assembly

    Genomic

    1. NW_006239064.1 Reference SolTub_3.0 Primary Assembly

      Range
      1159738..1169555 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015310742.1 → XP_015166228.1  probable UDP-arabinose 4-epimerase 2 isoform X2

      Conserved Domains (2) summary
      cd05247
      Location:68 → 398
      UDP_G4E_1_SDR_e; UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs
      TIGR01179
      Location:69 → 400
      galE; UDP-glucose-4-epimerase GalE

    2. XM_006351924.2 → XP_006351986.1  UDP-arabinose 4-epimerase 1-like isoform X3

      Conserved Domains (2) summary
      cd05247
      Location:52 → 382
      UDP_G4E_1_SDR_e; UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs
      TIGR01179
      Location:53 → 384
      galE; UDP-glucose-4-epimerase GalE

    3. XM_015310740.1 → XP_015166226.1  serine/threonine-protein phosphatase 7 long form homolog isoform X1

      UniProtKB/TrEMBL
      M1CT64
      Conserved Domains (1) summary
      pfam10536
      Location:81 → 441
      PMD; Plant mobile domain

    4. XM_015310741.1 → XP_015166227.1  serine/threonine-protein phosphatase 7 long form homolog isoform X1

      UniProtKB/TrEMBL
      M1CT64
      Conserved Domains (1) summary
      pfam10536
      Location:81 → 441
      PMD; Plant mobile domain

    5. XM_006351923.2 → XP_006351985.1  serine/threonine-protein phosphatase 7 long form homolog isoform X1

      UniProtKB/TrEMBL
      M1CT64
      Conserved Domains (1) summary
      pfam10536
      Location:81 → 441
      PMD; Plant mobile domain
    Nucleotide Protein
    Heading Accession and Version

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