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    TRAF2 TNF receptor associated factor 2 [ Alligator mississippiensis (American alligator) ]

    Gene ID: 102564363, updated on 8-May-2024

    Summary

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    Gene symbol
    TRAF2
    Gene description
    TNF receptor associated factor 2
    Locus tag
    Y1Q_0005555
    See related
    EnsemblRapid:ENSAMIG00015014375
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
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    Genomic context

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    See TRAF2 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 12 NC_081835.1 (50590512..50630196)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017713629.1 (6762615..6800340)

    Chromosome 12 - NC_081835.1Genomic Context describing neighboring genes Neighboring gene MAM domain containing 4 Neighboring gene endothelial differentiation related factor 1 Neighboring gene F-box and WD repeat domain containing 5 Neighboring gene complement C8 gamma chain

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tumor necrosis factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in activation of NF-kappaB-inducing kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of JNK cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of NF-kappaB transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K63-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein autoubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tumor necrosis factor-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of plasma membrane signaling receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TNF receptor-associated factor 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081835.1 Reference rAllMis1 Primary Assembly

      Range
      50590512..50630196
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019475779.2 → XP_019331324.1  TNF receptor-associated factor 2 isoform X3

      UniProtKB/TrEMBL
      A0A151MEZ0, A0A151MF16
      Related
      ENSAMIP00015018858.1, ENSAMIT00015026951.1

    2. XM_019475780.2 → XP_019331325.1  TNF receptor-associated factor 2 isoform X4

      UniProtKB/TrEMBL
      A0A151MEZ0
      Related
      ENSAMIP00015018853.1, ENSAMIT00015026944.1

    3. XM_019475778.2 → XP_019331323.1  TNF receptor-associated factor 2 isoform X1

      UniProtKB/TrEMBL
      A0A151MEZ0
      Related
      ENSAMIP00015018848.1, ENSAMIT00015026937.1

    4. XM_019475781.2 → XP_019331326.1  TNF receptor-associated factor 2 isoform X5

      UniProtKB/TrEMBL
      A0A151MF13

    5. XM_006267559.4 → XP_006267621.3  TNF receptor-associated factor 2 isoform X2

      UniProtKB/TrEMBL
      A0A151MEY9, A0A151MEZ0
      Related
      ENSAMIP00015018844.1, ENSAMIT00015026928.1
    Nucleotide Protein
    Heading Accession and Version

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