U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    PHF1 PHD finger protein 1 [ Alligator mississippiensis (American alligator) ]

    Gene ID: 102562967, updated on 8-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    PHF1
    Gene description
    PHD finger protein 1
    Locus tag
    Y1Q_0014115
    See related
    EnsemblRapid:ENSAMIG00015007830
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PHF1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 11 NC_081834.1 (64875342..64881146)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709233.1 (2784..8706)

    Chromosome 11 - NC_081834.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132244213 Neighboring gene kinesin family member C1 Neighboring gene cutA divalent cation tolerance homolog Neighboring gene synaptic Ras GTPase activating protein 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    PHD finger protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081834.1 Reference rAllMis1 Primary Assembly

      Range
      64875342..64881146
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019485651.2 → XP_019341196.1  PHD finger protein 1

      UniProtKB/TrEMBL
      A0A151NVE4
      Related
      ENSAMIP00015009649.1, ENSAMIT00015014071.1

    2. XM_019485652.2 → XP_019341197.1  PHD finger protein 1

      UniProtKB/TrEMBL
      A0A151NVE4

    3. XM_019485653.2 → XP_019341198.1  PHD finger protein 1

      UniProtKB/TrEMBL
      A0A151NVE4
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.