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    AHRR aryl-hydrocarbon receptor repressor [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

    Gene ID: 102446083, updated on 10-Mar-2024

    Summary

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    Gene symbol
    AHRR
    Gene description
    aryl-hydrocarbon receptor repressor
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pelodiscus sinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
    Orthologs
    human mouse all
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    Genomic context

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    See AHRR in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005852186.1 (2913482..3052210)

    NW_005852186.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102445275 Neighboring gene uncharacterized LOC112544114 Neighboring gene Myb/SANT DNA binding domain containing 3 Neighboring gene uncharacterized LOC102446317 Neighboring gene programmed cell death 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005852186 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of aryl hydrocarbon receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aryl hydrocarbon receptor repressor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PelSin_1.0 Primary Assembly

    Genomic

    1. NW_005852186.1 Reference PelSin_1.0 Primary Assembly

      Range
      2913482..3052210
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025179708.1 → XP_025035493.1  aryl hydrocarbon receptor repressor

      Conserved Domains (2) summary
      smart00353
      Location:34 → 75
      HLH; helix loop helix domain
      smart00091
      Location:111 → 173
      PAS; PAS domain
    Nucleotide Protein
    Heading Accession and Version

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