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    LOC102365162 proton myo-inositol cotransporter [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102365162, updated on 2-May-2024

    Summary

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    Gene symbol
    LOC102365162
    Gene description
    proton myo-inositol cotransporter
    See related
    Ensembl:ENSLACG00000008397
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Also known as
    SLC2A13
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    Genomic context

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    See LOC102365162 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 7 NC_088145.1 (61149793..61479824)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819760.1 (311092..642563, complement)

    Chromosome 7 - NC_088145.1Genomic Context describing neighboring genes Neighboring gene mucin-19 Neighboring gene uncharacterized LOC106704605 Neighboring gene leucine-rich repeat kinase 2 Neighboring gene regulator of DNA class I crossover intermediates 1 Neighboring gene ATP-binding cassette sub-family D member 2 Neighboring gene kinesin family member 21A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables myo-inositol:proton symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in myo-inositol transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apical plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proton myo-inositol cotransporter
    Names
    solute carrier family 2 member 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088145.1 Reference fLatCha1.pri

      Range
      61149793..61479824
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006001987.2 → XP_006002049.1  proton myo-inositol cotransporter isoform X2

      UniProtKB/TrEMBL
      M3XKG4
      Related
      ENSLACP00000023220.1
      Conserved Domains (2) summary
      cd06174
      Location:81 → 419
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam00083
      Location:79 → 604
      Sugar_tr; Sugar (and other) transporter

    2. XM_006001986.3 → XP_006002048.1  proton myo-inositol cotransporter isoform X1

      Conserved Domains (2) summary
      cd06174
      Location:81 → 586
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam00083
      Location:79 → 604
      Sugar_tr; Sugar (and other) transporter
    Nucleotide Protein
    Heading Accession and Version

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