U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    TOM1L1 target of myb1 like 1 membrane trafficking protein [ Myotis brandtii (Brandt's bat) ]

    Gene ID: 102248541, updated on 30-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    TOM1L1
    Gene description
    target of myb1 like 1 membrane trafficking protein
    Locus tag
    D623_10020718
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Myotis brandtii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TOM1L1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    101 current ASM41265v1 (GCF_000412655.1) Unplaced Scaffold NW_005364711.1 (2254323..2294943, complement)

    NW_005364711.1Genomic Context describing neighboring genes Neighboring gene syntaxin binding protein 4 Neighboring gene uncharacterized LOC102249151 Neighboring gene cytochrome c oxidase assembly protein COX11, mitochondrial Neighboring gene 40S ribosomal protein S17-like Neighboring gene kinesin family member 2B

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_005364711.1 Unplaced Scaffold Reference ASM41265v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    TOM1-like protein 1
    Names
    target of myb1 (chicken)-like 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Myotis brandtii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM41265v1

    Genomic

    1. NW_005364711.1 Reference ASM41265v1

      Range
      2254323..2294943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005872556.2 → XP_005872618.1  TOM1-like protein 1 isoform X2

      UniProtKB/TrEMBL
      S7N3Q1
      Conserved Domains (2) summary
      cd14237
      Location:199 → 290
      GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)
      cl02544
      Location:14 → 154
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...

    2. XM_014544839.1 → XP_014400325.1  TOM1-like protein 1 isoform X1

      UniProtKB/TrEMBL
      S7N3Q1
      Conserved Domains (2) summary
      cd14237
      Location:204 → 295
      GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)
      cl02544
      Location:25 → 159
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...

    3. XM_014544840.1 → XP_014400326.1  TOM1-like protein 1 isoform X3

      Conserved Domains (2) summary
      cd14237
      Location:112 → 203
      GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)
      cl02544
      Location:25 → 115
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...

    RNA

    1. XR_001363348.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.