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    SCML1 Scm polycomb group protein like 1 [ Macaca fascicularis (crab-eating macaque) ]

    Gene ID: 102143778, updated on 3-Dec-2024

    Summary

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    Gene symbol
    SCML1
    Gene description
    Scm polycomb group protein like 1
    See related
    Ensembl:ENSMFAG00000038986
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca fascicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SCML1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) X NC_088395.1 (17587999..17606030)
    102 previous assembly MFA1912RKSv2 (GCF_012559485.2) X NC_052275.1 (17189115..17207143)

    Chromosome X - NC_088395.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene NHS actin remodeling regulator Neighboring gene uncharacterized LOC135969195 Neighboring gene uncharacterized LOC135969304 Neighboring gene retinoic acid induced 2 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene BEN domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sex comb on midleg-like protein 1
    Names
    Sex comb on midleg-like protein 1
    sex comb on midleg like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference T2T-MFA8v1.0

    Genomic

    1. NC_088395.1 Reference T2T-MFA8v1.0

      Range
      17587999..17606030
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045383534.2 → XP_045239469.1  sex comb on midleg-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A2K5TNJ0, G7Q346
      Conserved Domains (1) summary
      cd09578
      Location:291 → 362
      SAM_Scm; SAM domain of Scm proteins of Polycomb group

    2. XM_005593076.4 → XP_005593133.1  sex comb on midleg-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A2K5TNJ0, G7Q346
      Conserved Domains (1) summary
      cd09578
      Location:291 → 362
      SAM_Scm; SAM domain of Scm proteins of Polycomb group

    3. XM_015443360.3 → XP_015298846.1  sex comb on midleg-like protein 1 isoform X4

      UniProtKB/TrEMBL
      G7Q346
      Conserved Domains (2) summary
      cd09578
      Location:290 → 361
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:293 → 361
      SAM; Sterile alpha motif

    4. XM_005593079.4 → XP_005593136.1  sex comb on midleg-like protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A2K5TNJ3, G7Q346
      Related
      ENSMFAP00000001603.1
      Conserved Domains (2) summary
      cd09578
      Location:252 → 323
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:255 → 323
      SAM; Sterile alpha motif

    5. XM_005593082.4 → XP_005593139.1  sex comb on midleg-like protein 1 isoform X7

      UniProtKB/TrEMBL
      G7Q346
      Conserved Domains (1) summary
      cd09578
      Location:219 → 290
      SAM_Scm; SAM domain of Scm proteins of Polycomb group

    6. XM_015443361.3 → XP_015298847.1  sex comb on midleg-like protein 1 isoform X7

      UniProtKB/TrEMBL
      G7Q346
      Conserved Domains (1) summary
      cd09578
      Location:219 → 290
      SAM_Scm; SAM domain of Scm proteins of Polycomb group

    7. XM_045383533.2 → XP_045239468.1  sex comb on midleg-like protein 1 isoform X1

      Conserved Domains (1) summary
      cd09578
      Location:323 → 394
      SAM_Scm; SAM domain of Scm proteins of Polycomb group

    8. XM_005593077.4 → XP_005593134.1  sex comb on midleg-like protein 1 isoform X5

      UniProtKB/TrEMBL
      G7Q346
      Conserved Domains (2) summary
      cd09578
      Location:285 → 356
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:288 → 356
      SAM; Sterile alpha motif

    9. XM_005593073.4 → XP_005593130.1  sex comb on midleg-like protein 1 isoform X2

      Conserved Domains (2) summary
      cd09578
      Location:322 → 393
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:325 → 393
      SAM; Sterile alpha motif
    Nucleotide Protein
    Heading Accession and Version

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