U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    ATXN2L ataxin 2 like [ Macaca fascicularis (crab-eating macaque) ]

    Gene ID: 102117238, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    ATXN2L
    Gene description
    ataxin 2 like
    See related
    Ensembl:ENSMFAG00000030590
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca fascicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ATXN2L in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 20 NC_088394.1 (27637180..27651932, complement)
    102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 20 NC_052274.1 (26856548..26871619, complement)

    Chromosome 20 - NC_088394.1Genomic Context describing neighboring genes Neighboring gene SH2B adaptor protein 1 Neighboring gene Tu translation elongation factor, mitochondrial Neighboring gene uncharacterized LOC101926300 Neighboring gene uncharacterized LOC135968878 Neighboring gene small nucleolar RNA U13

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in stress granule assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ataxin-2-like protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference T2T-MFA8v1.0

    Genomic

    1. NC_088394.1 Reference T2T-MFA8v1.0

      Range
      27637180..27651932 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045382844.2 → XP_045238779.1  ataxin-2-like protein isoform X20

      UniProtKB/TrEMBL
      A0A2K5UUU0

    2. XM_005591563.4 → XP_005591620.1  ataxin-2-like protein isoform X14

      See identical proteins and their annotated locations for XP_005591620.1

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Conserved Domains (4) summary
      COG5180
      Location:211 → 746
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam03153
      Location:759 → 943
      TFIIA; Transcription factor IIA, alpha/beta subunit
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 193
      SM-ATX; Ataxin 2 SM domain

    3. XM_005591562.4 → XP_005591619.1  ataxin-2-like protein isoform X13

      See identical proteins and their annotated locations for XP_005591619.1

      UniProtKB/TrEMBL
      A0A2K5UV24
      Conserved Domains (2) summary
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 193
      SM-ATX; Ataxin 2 SM domain

    4. XM_065537385.1 → XP_065393457.1  ataxin-2-like protein isoform X17

      UniProtKB/TrEMBL
      A0A2K5UUU0

    5. XM_065537387.1 → XP_065393459.1  ataxin-2-like protein isoform X17

      UniProtKB/TrEMBL
      A0A2K5UUU0

    6. XM_065537386.1 → XP_065393458.1  ataxin-2-like protein isoform X17

      UniProtKB/TrEMBL
      A0A2K5UUU0

    7. XM_065537384.1 → XP_065393456.1  ataxin-2-like protein isoform X4

      UniProtKB/TrEMBL
      A0A2K5UUU0

    8. XM_065537382.1 → XP_065393454.1  ataxin-2-like protein isoform X4

      UniProtKB/TrEMBL
      A0A2K5UUU0

    9. XM_065537383.1 → XP_065393455.1  ataxin-2-like protein isoform X4

      UniProtKB/TrEMBL
      A0A2K5UUU0

    10. XM_005591559.4 → XP_005591616.1  ataxin-2-like protein isoform X9

      See identical proteins and their annotated locations for XP_005591616.1

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Conserved Domains (4) summary
      COG5180
      Location:211 → 746
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam03153
      Location:759 → 943
      TFIIA; Transcription factor IIA, alpha/beta subunit
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 193
      SM-ATX; Ataxin 2 SM domain

    11. XM_005591558.4 → XP_005591615.1  ataxin-2-like protein isoform X8

      See identical proteins and their annotated locations for XP_005591615.1

      UniProtKB/TrEMBL
      A0A2K5UV24
      Conserved Domains (2) summary
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 193
      SM-ATX; Ataxin 2 SM domain

    12. XM_065537379.1 → XP_065393451.1  ataxin-2-like protein isoform X2

      UniProtKB/TrEMBL
      A0A2K5UUU0

    13. XM_065537377.1 → XP_065393449.1  ataxin-2-like protein isoform X2

      UniProtKB/TrEMBL
      A0A2K5UUU0

    14. XM_065537378.1 → XP_065393450.1  ataxin-2-like protein isoform X2

      UniProtKB/TrEMBL
      A0A2K5UUU0

    15. XM_015442531.3 → XP_015298017.1  ataxin-2-like protein isoform X12

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Conserved Domains (4) summary
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:125 → 198
      SM-ATX; Ataxin 2 SM domain
      cl25764
      Location:760 → 999
      PAT1; Topoisomerase II-associated protein PAT1
      cl26464
      Location:338 → 950
      Atrophin-1; Atrophin-1 family

    16. XM_015442530.3 → XP_015298016.1  ataxin-2-like protein isoform X11

      UniProtKB/TrEMBL
      A0A2K5UV24
      Conserved Domains (4) summary
      COG5180
      Location:211 → 752
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam03153
      Location:765 → 949
      TFIIA; Transcription factor IIA, alpha/beta subunit
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 193
      SM-ATX; Ataxin 2 SM domain

    17. XM_015442534.3 → XP_015298020.1  ataxin-2-like protein isoform X15

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Conserved Domains (4) summary
      COG5180
      Location:211 → 752
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam09770
      Location:798 → 1039
      PAT1; Topoisomerase II-associated protein PAT1
      pfam06741
      Location:266 → 334
      LsmAD; LsmAD domain
      pfam14438
      Location:122 → 198
      SM-ATX; Ataxin 2 SM domain

    18. XM_065537380.1 → XP_065393452.1  ataxin-2-like protein isoform X3

      UniProtKB/TrEMBL
      A0A2K5UUU0

    19. XM_065537381.1 → XP_065393453.1  ataxin-2-like protein isoform X3

      UniProtKB/TrEMBL
      A0A2K5UUU0

    20. XM_015442524.3 → XP_015298010.1  ataxin-2-like protein isoform X7

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Conserved Domains (4) summary
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:125 → 198
      SM-ATX; Ataxin 2 SM domain
      cl25764
      Location:760 → 999
      PAT1; Topoisomerase II-associated protein PAT1
      cl26464
      Location:338 → 950
      Atrophin-1; Atrophin-1 family

    21. XM_015442523.3 → XP_015298009.1  ataxin-2-like protein isoform X6

      UniProtKB/TrEMBL
      A0A2K5UV24
      Conserved Domains (3) summary
      COG5180
      Location:211 → 752
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 193
      SM-ATX; Ataxin 2 SM domain

    22. XM_015442516.3 → XP_015298002.1  ataxin-2-like protein isoform X1

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Conserved Domains (4) summary
      COG5180
      Location:211 → 752
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:669 → 949
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:125 → 198
      SM-ATX; Ataxin 2 SM domain

    23. XM_015442535.3 → XP_015298021.1  ataxin-2-like protein isoform X15

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Conserved Domains (4) summary
      COG5180
      Location:211 → 752
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam09770
      Location:798 → 1039
      PAT1; Topoisomerase II-associated protein PAT1
      pfam06741
      Location:266 → 334
      LsmAD; LsmAD domain
      pfam14438
      Location:122 → 198
      SM-ATX; Ataxin 2 SM domain

    24. XM_015442528.3 → XP_015298014.1  ataxin-2-like protein isoform X10

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Conserved Domains (4) summary
      PHA03247
      Location:676 → 1059
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:211 → 752
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:125 → 198
      SM-ATX; Ataxin 2 SM domain

    25. XM_015442518.3 → XP_015298004.1  ataxin-2-like protein isoform X1

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Conserved Domains (4) summary
      COG5180
      Location:211 → 752
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:669 → 949
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:125 → 198
      SM-ATX; Ataxin 2 SM domain

    26. XM_015442533.3 → XP_015298019.1  ataxin-2-like protein isoform X15

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Conserved Domains (4) summary
      COG5180
      Location:211 → 752
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam09770
      Location:798 → 1039
      PAT1; Topoisomerase II-associated protein PAT1
      pfam06741
      Location:266 → 334
      LsmAD; LsmAD domain
      pfam14438
      Location:122 → 198
      SM-ATX; Ataxin 2 SM domain

    27. XM_015442527.3 → XP_015298013.1  ataxin-2-like protein isoform X10

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Conserved Domains (4) summary
      PHA03247
      Location:676 → 1059
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:211 → 752
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:125 → 198
      SM-ATX; Ataxin 2 SM domain

    28. XM_045382831.2 → XP_045238766.1  ataxin-2-like protein isoform X10

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Conserved Domains (4) summary
      PHA03247
      Location:676 → 1059
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:211 → 752
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:125 → 198
      SM-ATX; Ataxin 2 SM domain

    29. XM_015442517.3 → XP_015298003.1  ataxin-2-like protein isoform X1

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Related
      ENSMFAP00000016185.1
      Conserved Domains (4) summary
      COG5180
      Location:211 → 752
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:669 → 949
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:125 → 198
      SM-ATX; Ataxin 2 SM domain

    30. XM_015442526.3 → XP_015298012.1  ataxin-2-like protein isoform X10

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Conserved Domains (4) summary
      PHA03247
      Location:676 → 1059
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:211 → 752
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:125 → 198
      SM-ATX; Ataxin 2 SM domain

    31. XM_015442537.3 → XP_015298023.1  ataxin-2-like protein isoform X16

      UniProtKB/TrEMBL
      G7Q0U2
      Conserved Domains (4) summary
      COG5180
      Location:150 → 691
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam09770
      Location:737 → 975
      PAT1; Topoisomerase II-associated protein PAT1
      pfam06741
      Location:205 → 273
      LsmAD; LsmAD domain
      pfam14438
      Location:61 → 137
      SM-ATX; Ataxin 2 SM domain

    32. XM_045382842.2 → XP_045238777.1  ataxin-2-like protein isoform X18

      UniProtKB/TrEMBL
      G7Q0U2

    33. XM_045382843.2 → XP_045238778.1  ataxin-2-like protein isoform X19

      UniProtKB/TrEMBL
      A0A2K5UUU0

    34. XM_015442522.3 → XP_015298008.1  ataxin-2-like protein isoform X5

      UniProtKB/TrEMBL
      A0A2K5UUU0
      Related
      ENSMFAP00000015900.1
      Conserved Domains (4) summary
      pfam06741
      Location:266 → 328
      LsmAD; LsmAD domain
      pfam14438
      Location:125 → 198
      SM-ATX; Ataxin 2 SM domain
      cl25764
      Location:871 → 1038
      PAT1; Topoisomerase II-associated protein PAT1
      cl26464
      Location:400 → 944
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.