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    HTATSF1 HIV-1 Tat specific factor 1 [ Geospiza fortis (medium ground-finch) ]

    Gene ID: 102037549, updated on 3-Aug-2024

    Summary

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    Gene symbol
    HTATSF1
    Gene description
    HIV-1 Tat specific factor 1
    See related
    Ensembl:ENSGFOG00000011937
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Geospiza fortis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
    Orthologs
    human mouse all
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    Genomic context

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    See HTATSF1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054349.1 (29230..45822)

    NW_005054349.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115948128 Neighboring gene bombesin receptor subtype 3 Neighboring gene vestigial like family member 1 Neighboring gene CD40 ligand

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005054349 Unplaced Scaffold Reference GeoFor_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    HIV Tat-specific factor 1
    Names
    HIV Tat-specific factor 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GeoFor_1.0

    Genomic

    1. NW_005054349.1 Reference GeoFor_1.0

      Range
      29230..45822
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005423297.2 → XP_005423354.1  HIV Tat-specific factor 1

      UniProtKB/TrEMBL
      A0A6I9HL81
      Related
      ENSGFOP00000017602.1, ENSGFOT00000018179.1
      Conserved Domains (3) summary
      COG0724
      Location:33 → 212
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12281
      Location:126 → 216
      RRM1_TatSF1_like; RNA recognition motif 1 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
      cd12282
      Location:257 → 347
      RRM2_TatSF1_like; RNA recognition motif 2 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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