U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC101879748 receptor-type tyrosine-protein phosphatase kappa-like [ Melopsittacus undulatus (budgerigar) ]

    Gene ID: 101879748, updated on 14-Nov-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC101879748
    Gene description
    receptor-type tyrosine-protein phosphatase kappa-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Melopsittacus undulatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittaculidae; Melopsittacus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC101879748 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    RS_2024_11 current bMelUnd1.mat.Z (GCF_012275295.1) Z NC_047557.1 (10928595..10953248)

    Chromosome Z - NC_047557.1Genomic Context describing neighboring genes Neighboring gene phospholipid-transporting ATPase FetA-like Neighboring gene eukaryotic translation initiation factor 4E-like Neighboring gene RUN and SH3 domain containing 2 Neighboring gene uncharacterized LOC117437965 Neighboring gene testis associated actin remodelling kinase 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_047557.1 Chromosome Z Reference bMelUnd1.mat.Z

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    receptor-type tyrosine-protein phosphatase kappa-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_012275295.1-RS_2024_11

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bMelUnd1.mat.Z

    Genomic

    1. NC_047557.1 Reference bMelUnd1.mat.Z

      Range
      10928595..10953248
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034073302.1 → XP_033929193.1  receptor-type tyrosine-protein phosphatase kappa-like

      Conserved Domains (3) summary
      smart00194
      Location:1127 → 1388
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd00063
      Location:513 → 591
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00102
      Location:865 → 1094
      Y_phosphatase; Protein-tyrosine phosphatase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases