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    CTNNB1 catenin beta 1 [ Anas platyrhynchos (mallard) ]

    Gene ID: 101805265, updated on 8-Mar-2024

    Summary

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    Gene symbol
    CTNNB1
    Gene description
    catenin beta 1
    Locus tag
    Anapl_11799
    See related
    EnsemblRapid:ENSAPLG00030022308
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Anas platyrhynchos
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
    Orthologs
    human mouse all
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    Genomic context

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    See CTNNB1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    104 current ZJU1.0 (GCF_015476345.1) 2 NC_051773.1 (117787312..117810181, complement)
    103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 2 NC_040047.1 (46046267..46069186)

    Chromosome 2 - NC_051773.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 9 member A3 Neighboring gene trafficking kinesin protein 1 Neighboring gene unc-51 like kinase 4 Neighboring gene KIAA1143 ortholog Neighboring gene kinesin family member 15 Neighboring gene transmembrane protein 42

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-catenin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein phosphatase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catenin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    catenin beta-1
    Names
    beta-catenin
    catenin beta1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001310408.1 → NP_001297337.1  catenin beta-1

      See identical proteins and their annotated locations for NP_001297337.1

      Status: PROVISIONAL

      Source sequence(s)
      FJ169885
      UniProtKB/TrEMBL
      B5U453, R0LMK7, U3J1G9
      Related
      ENSAPLP00030037530.1, ENSAPLT00030058302.1
      Conserved Domains (4) summary
      smart00185
      Location:350 → 390
      ARM; Armadillo/beta-catenin-like repeats
      COG5064
      Location:142 → 431
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:402 → 427
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:583 → 622
      Arm; Armadillo/beta-catenin-like repeat

    RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ZJU1.0 Primary Assembly

    Genomic

    1. NC_051773.1 Reference ZJU1.0 Primary Assembly

      Range
      117787312..117810181 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027450107.2 → XP_027305908.1  catenin beta-1 isoform X1

      UniProtKB/TrEMBL
      B5U453, R0LMK7, U3J1G9
      Conserved Domains (4) summary
      smart00185
      Location:350 → 390
      ARM; Armadillo/beta-catenin-like repeats
      COG5064
      Location:142 → 431
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:402 → 427
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:583 → 622
      Arm; Armadillo/beta-catenin-like repeat

    2. XM_027450108.2 → XP_027305909.1  catenin beta-1 isoform X2

      UniProtKB/TrEMBL
      A0A493U1C5, A0A8B9TPI0, R0LMK7
      Related
      ENSAPLP00030037587.1, ENSAPLT00030058377.1
      Conserved Domains (4) summary
      smart00185
      Location:350 → 390
      ARM; Armadillo/beta-catenin-like repeats
      COG5064
      Location:231 → 431
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:402 → 427
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:583 → 622
      Arm; Armadillo/beta-catenin-like repeat

    3. XM_027450106.2 → XP_027305907.1  catenin beta-1 isoform X1

      UniProtKB/TrEMBL
      B5U453, R0LMK7, U3J1G9
      Conserved Domains (4) summary
      smart00185
      Location:350 → 390
      ARM; Armadillo/beta-catenin-like repeats
      COG5064
      Location:142 → 431
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:402 → 427
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:583 → 622
      Arm; Armadillo/beta-catenin-like repeat
    Nucleotide Protein
    Heading Accession and Version

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