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    SUPT3H SPT3 homolog, SAGA and STAGA complex component [ Anas platyrhynchos (mallard) ]

    Gene ID: 101791153, updated on 8-Mar-2024

    Summary

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    Gene symbol
    SUPT3H
    Gene description
    SPT3 homolog, SAGA and STAGA complex component
    Locus tag
    Anapl_01269
    See related
    EnsemblRapid:ENSAPLG00030002518
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anas platyrhynchos
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
    Orthologs
    human mouse all
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    Genomic context

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    See SUPT3H in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current ZJU1.0 (GCF_015476345.1) 3 NC_051774.1 (113611676..113890322, complement)
    103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 3 NC_040048.1 (112194981..112468200, complement)

    Chromosome 3 - NC_051774.1Genomic Context describing neighboring genes Neighboring gene cell division cycle 5 like Neighboring gene uncharacterized LOC119716299 Neighboring gene RUNX family transcription factor 2 Neighboring gene uncharacterized LOC110354367 Neighboring gene chloride intracellular channel 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation protein SPT3 homolog
    Names
    Transcription initiation protein SPT3-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ZJU1.0 Primary Assembly

    Genomic

    1. NC_051774.1 Reference ZJU1.0 Primary Assembly

      Range
      113611676..113890322 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038176224.1 → XP_038032152.1  transcription initiation protein SPT3 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8B9QP83
      Conserved Domains (1) summary
      pfam02269
      Location:26 → 117
      TFIID-18kDa; Transcription initiation factor IID, 18kD subunit

    2. XM_038176225.1 → XP_038032153.1  transcription initiation protein SPT3 homolog isoform X2

      UniProtKB/TrEMBL
      R0LWR5, U3J8A7
      Related
      ENSAPLP00030005787.1, ENSAPLT00030007016.1
      Conserved Domains (1) summary
      pfam02269
      Location:26 → 117
      TFIID-18kDa; Transcription initiation factor IID, 18kD subunit

    3. XM_038176226.1 → XP_038032154.1  transcription initiation protein SPT3 homolog isoform X3

      Conserved Domains (1) summary
      cl02174
      Location:1 → 30
      TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    Nucleotide Protein
    Heading Accession and Version

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