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    FUBP1 far upstream element binding protein 1 [ Anas platyrhynchos (mallard) ]

    Gene ID: 101790318, updated on 8-Mar-2024

    Summary

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    Gene symbol
    FUBP1
    Gene description
    far upstream element binding protein 1
    Locus tag
    Anapl_04665
    See related
    EnsemblRapid:ENSAPLG00030020103
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anas platyrhynchos
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
    Orthologs
    human mouse all
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    Genomic context

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    See FUBP1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    104 current ZJU1.0 (GCF_015476345.1) 8 NC_051779.1 (19949848..19986840)
    103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 8 NC_040053.1 (16646021..16682784, complement)

    Chromosome 8 - NC_051779.1Genomic Context describing neighboring genes Neighboring gene GIPC PDZ domain containing family member 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member B4 Neighboring gene nexilin F-actin binding protein Neighboring gene mitoguardin 1 Neighboring gene ubiquitin specific peptidase 33 Neighboring gene zinc finger ZZ-type containing 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    far upstream element-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ZJU1.0 Primary Assembly

    Genomic

    1. NC_051779.1 Reference ZJU1.0 Primary Assembly

      Range
      19949848..19986840
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027463766.2 → XP_027319567.1  far upstream element-binding protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8B9TF96
      Conserved Domains (5) summary
      pfam09005
      Location:612 → 626
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:116 → 190
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:204 → 273
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:278 → 345
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:378 → 449
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    2. XM_027463773.2 → XP_027319574.1  far upstream element-binding protein 1 isoform X13

      UniProtKB/TrEMBL
      U3IEG9
      Related
      ENSAPLP00030033342.1, ENSAPLT00030052347.1

    3. XM_027463761.2 → XP_027319562.1  far upstream element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8B9TF96
      Conserved Domains (5) summary
      pfam09005
      Location:628 → 642
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:116 → 190
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:204 → 273
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:294 → 361
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:394 → 465
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    4. XM_027463765.2 → XP_027319566.1  far upstream element-binding protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8B9TF96
      Related
      ENSAPLP00030033682.1, ENSAPLT00030052853.1
      Conserved Domains (5) summary
      pfam09005
      Location:628 → 642
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:116 → 190
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:204 → 273
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:294 → 361
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:394 → 465
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    5. XM_027463764.2 → XP_027319565.1  far upstream element-binding protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8B9TF96
      Conserved Domains (5) summary
      pfam09005
      Location:628 → 642
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:116 → 190
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:204 → 273
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:294 → 361
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:394 → 465
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    6. XM_027463769.2 → XP_027319570.1  far upstream element-binding protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A8B9TF96
      Conserved Domains (5) summary
      pfam09005
      Location:628 → 642
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:116 → 190
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:204 → 273
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:294 → 361
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:394 → 465
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    7. XM_027463763.2 → XP_027319564.1  far upstream element-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8B9TF96
      Related
      ENSAPLP00030033558.1, ENSAPLT00030052661.1
      Conserved Domains (5) summary
      pfam09005
      Location:628 → 642
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:116 → 190
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:204 → 273
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:294 → 361
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:394 → 465
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    8. XM_027463762.2 → XP_027319563.1  far upstream element-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8B9TF96
      Conserved Domains (5) summary
      pfam09005
      Location:627 → 641
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:116 → 190
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:204 → 273
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:294 → 361
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:394 → 465
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    9. XM_027463770.2 → XP_027319571.1  far upstream element-binding protein 1 isoform X9

      UniProtKB/TrEMBL
      A0A8B9TF96
      Conserved Domains (5) summary
      pfam09005
      Location:607 → 621
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:95 → 169
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:183 → 252
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:273 → 340
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:373 → 444
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    10. XM_027463772.2 → XP_027319573.1  far upstream element-binding protein 1 isoform X12

      UniProtKB/TrEMBL
      A0A8B9TF96
      Conserved Domains (5) summary
      pfam09005
      Location:590 → 604
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:95 → 169
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:183 → 252
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:257 → 324
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:357 → 428
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    11. XM_027463768.2 → XP_027319569.1  far upstream element-binding protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A8B9TF96
      Related
      ENSAPLP00030033410.1, ENSAPLT00030052448.1
      Conserved Domains (5) summary
      pfam09005
      Location:628 → 642
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:116 → 190
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:204 → 273
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:294 → 361
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:394 → 465
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    12. XM_027463771.2 → XP_027319572.1  far upstream element-binding protein 1 isoform X10

      UniProtKB/TrEMBL
      A0A8B9TEW1, A0A8B9TF96
      Related
      ENSAPLP00030033841.1, ENSAPLT00030053065.1
      Conserved Domains (5) summary
      pfam09005
      Location:606 → 620
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:95 → 169
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:183 → 252
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:273 → 340
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:373 → 444
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    13. XM_038183274.1 → XP_038039202.1  far upstream element-binding protein 1 isoform X11

      UniProtKB/TrEMBL
      A0A8B9TF96
      Related
      ENSAPLP00030033478.1, ENSAPLT00030052546.1
      Conserved Domains (5) summary
      pfam09005
      Location:606 → 620
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:95 → 169
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:183 → 252
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:273 → 340
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:373 → 444
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    RNA

    1. XR_005267614.1 RNA Sequence

    2. XR_003498967.2 RNA Sequence

    3. XR_003498961.2 RNA Sequence

    4. XR_003498963.2 RNA Sequence

    5. XR_003498964.2 RNA Sequence

    6. XR_005267613.1 RNA Sequence

    7. XR_003498965.2 RNA Sequence

    8. XR_003498966.2 RNA Sequence

    9. XR_003498962.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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