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    LOC101769172 probable DNA helicase MCM8 [ Setaria italica (foxtail millet) ]

    Gene ID: 101769172, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC101769172
    Gene description
    probable DNA helicase MCM8
    Locus tag
    SETIT_021273mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Setaria italica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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    Genomic context

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    See LOC101769172 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current Setaria_italica_v2.0 (GCF_000263155.2) III NC_028452.1 (17255391..17264643, complement)
    101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675963.1 (17256049..17265231, complement)

    Chromosome III - NC_028452.1Genomic Context describing neighboring genes Neighboring gene probable apyrase 7 Neighboring gene 40S ribosomal protein S23 Neighboring gene uncharacterized LOC101770395 Neighboring gene E3 ubiquitin-protein ligase UPL4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA duplex unwinding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MCM complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable DNA helicase MCM8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Setaria_italica_v2.0 Primary Assembly

    Genomic

    1. NC_028452.1 Reference Setaria_italica_v2.0 Primary Assembly

      Range
      17255391..17264643 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022825569.1 → XP_022681304.1  probable DNA helicase MCM8 isoform X2

      UniProtKB/TrEMBL
      K3Z405
      Conserved Domains (1) summary
      COG1241
      Location:75 → 770
      Mcm2; DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair]

    2. XM_022825570.1 → XP_022681305.1  probable DNA helicase MCM8 isoform X3

      UniProtKB/TrEMBL
      A0A368QHC0
      Conserved Domains (1) summary
      COG1241
      Location:75 → 764
      Mcm2; DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair]

    3. XM_004961751.3 → XP_004961808.1  probable DNA helicase MCM8 isoform X1

      UniProtKB/TrEMBL
      A0A368QHI8
      Conserved Domains (1) summary
      COG1241
      Location:75 → 771
      Mcm2; DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair]
    Nucleotide Protein Strain
    Heading Accession and Version

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