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    LOC101598536 small nuclear ribonucleoprotein E-like [ Jaculus jaculus (lesser Egyptian jerboa) ]

    Gene ID: 101598536, updated on 16-Nov-2023

    Summary

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    Gene symbol
    LOC101598536
    Gene description
    small nuclear ribonucleoprotein E-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Jaculus jaculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Dipodoidea; Dipodidae; Dipodinae; Jaculus
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    Genomic context

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    See LOC101598536 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current mJacJac1.mat.Y.cur (GCF_020740685.1) X NC_059125.1 (72999670..73004442)
    101 previous assembly JacJac1.0 (GCF_000280705.1) Unplaced Scaffold NW_004504445.1 (1218127..1218405)

    Chromosome X - NC_059125.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD35 Neighboring gene TATA box-binding protein-like 1 Neighboring gene melanoma antigen preferentially expressed in tumors-like Neighboring gene U2 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small nuclear ribonucleoprotein E-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Jaculus jaculus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mJacJac1.mat.Y.cur Primary Assembly

    Genomic

    1. NC_059125.1 Reference mJacJac1.mat.Y.cur Primary Assembly

      Range
      72999670..73004442
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045141114.1 → XP_044997049.1  small nuclear ribonucleoprotein E-like

    Nucleotide Protein
    Heading Accession and Version

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