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    LOXHD1 lipoxygenase homology PLAT domains 1 [ Tursiops truncatus (common bottlenose dolphin) ]

    Gene ID: 101332430, updated on 8-Mar-2024

    Summary

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    Gene symbol
    LOXHD1
    Gene description
    lipoxygenase homology PLAT domains 1
    See related
    EnsemblRapid:ENSTTRG00000014052
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tursiops truncatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops
    Orthologs
    human mouse all
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    Genomic context

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    See LOXHD1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    102 current mTurTru1.mat.Y (GCF_011762595.1) 13 NC_047046.1 (61822849..62024663, complement)
    101 previous assembly NIST Tur_tru v1 (GCF_001922835.1) Unplaced Scaffold NW_017843255.1 (35102916..35289104, complement)

    Chromosome 13 - NC_047046.1Genomic Context describing neighboring genes Neighboring gene arkadia (RNF111) N-terminal like PKA signaling regulator 2N Neighboring gene arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 Neighboring gene 40S ribosomal protein S25-like Neighboring gene protein inhibitor of activated STAT 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipoxygenase homology domain-containing protein 1
    Names
    lipoxygenase homology domains 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tursiops truncatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mTurTru1.mat.Y Primary Assembly

    Genomic

    1. NC_047046.1 Reference mTurTru1.mat.Y Primary Assembly

      Range
      61822849..62024663 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033837948.1 → XP_033693839.1  lipoxygenase homology domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A6J3PUM5
      Related
      ENSTTRP00000017700.1, ENSTTRT00000034974.1
      Conserved Domains (2) summary
      cd01756
      Location:65 → 185
      PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
      cl00011
      Location:1044 → 1103
      PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...

    2. XM_033837949.1 → XP_033693840.1  lipoxygenase homology domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A6J3PUQ9
      Conserved Domains (2) summary
      cd01756
      Location:253 → 373
      PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
      cl00011
      Location:947 → 1011
      PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...

    3. XM_033837947.1 → XP_033693838.1  lipoxygenase homology domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A6J3PVF9
      Related
      ENSTTRP00000034254.1, ENSTTRT00000033626.1
      Conserved Domains (2) summary
      cd01756
      Location:1024 → 1144
      PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
      cl00011
      Location:816 → 896
      PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
    Nucleotide Protein
    Heading Accession and Version

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