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    NEO1 neogenin 1 [ Tursiops truncatus (common bottlenose dolphin) ]

    Gene ID: 101319090, updated on 8-Mar-2024

    Summary

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    Gene symbol
    NEO1
    Gene description
    neogenin 1
    See related
    EnsemblRapid:ENSTTRG00000015675
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tursiops truncatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops
    Orthologs
    human mouse all
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    Genomic context

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    See NEO1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    102 current mTurTru1.mat.Y (GCF_011762595.1) 2 NC_047035.1 (114377731..114618629)
    101 previous assembly NIST Tur_tru v1 (GCF_001922835.1) Unplaced Scaffold NW_017842395.1 (17808479..18029539)

    Chromosome 2 - NC_047035.1Genomic Context describing neighboring genes Neighboring gene ADP dependent glucokinase Neighboring gene ADP-ribosylation factor 4-like Neighboring gene U6 spliceosomal RNA Neighboring gene sorting nexin-4-like Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neogenin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tursiops truncatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mTurTru1.mat.Y Primary Assembly

    Genomic

    1. NC_047035.1 Reference mTurTru1.mat.Y Primary Assembly

      Range
      114377731..114618629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033851950.1 → XP_033707841.1  neogenin isoform X1

      UniProtKB/TrEMBL
      A0A6J3QZ92
      Conserved Domains (9) summary
      smart00060
      Location:781 → 860
      FN3; Fibronectin type 3 domain
      cd00063
      Location:559 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:656 → 763
      fn3; Fibronectin type III domain
      pfam06583
      Location:1173 → 1476
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    2. XM_033851956.1 → XP_033707847.1  neogenin isoform X9

      UniProtKB/TrEMBL
      A0A6J3QZZ8
      Conserved Domains (9) summary
      smart00060
      Location:781 → 860
      FN3; Fibronectin type 3 domain
      cd00063
      Location:559 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:656 → 763
      fn3; Fibronectin type III domain
      pfam06583
      Location:1173 → 1403
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    3. XM_033851957.1 → XP_033707848.1  neogenin isoform X10

      UniProtKB/TrEMBL
      A0A6J3R156
      Conserved Domains (9) summary
      smart00060
      Location:781 → 860
      FN3; Fibronectin type 3 domain
      cd00063
      Location:559 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:656 → 763
      fn3; Fibronectin type III domain
      pfam06583
      Location:1173 → 1403
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    4. XM_033851955.1 → XP_033707846.1  neogenin isoform X8

      UniProtKB/TrEMBL
      A0A6J3QZK7
      Conserved Domains (9) summary
      smart00060
      Location:781 → 860
      FN3; Fibronectin type 3 domain
      cd00063
      Location:559 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:656 → 763
      fn3; Fibronectin type III domain
      pfam06583
      Location:1173 → 1423
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    5. XM_033851952.1 → XP_033707843.1  neogenin isoform X3

      UniProtKB/TrEMBL
      A0A6J3R150
      Related
      ENSTTRP00000027682.1, ENSTTRT00000041409.1
      Conserved Domains (9) summary
      smart00060
      Location:781 → 860
      FN3; Fibronectin type 3 domain
      cd00063
      Location:559 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:656 → 763
      fn3; Fibronectin type III domain
      pfam06583
      Location:1173 → 1453
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    6. XM_033851949.1 → XP_033707840.1  neogenin isoform X1

      UniProtKB/TrEMBL
      A0A6J3QZ92
      Conserved Domains (9) summary
      smart00060
      Location:781 → 860
      FN3; Fibronectin type 3 domain
      cd00063
      Location:559 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:656 → 763
      fn3; Fibronectin type III domain
      pfam06583
      Location:1173 → 1476
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    7. XM_033851951.1 → XP_033707842.1  neogenin isoform X2

      UniProtKB/TrEMBL
      A0A6J3QZZ4
      Conserved Domains (9) summary
      smart00060
      Location:781 → 860
      FN3; Fibronectin type 3 domain
      cd00063
      Location:559 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:656 → 763
      fn3; Fibronectin type III domain
      pfam06583
      Location:1160 → 1463
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    8. XM_033851953.1 → XP_033707844.1  neogenin isoform X4

      UniProtKB/TrEMBL
      A0A6J3R028
      Conserved Domains (9) summary
      smart00060
      Location:761 → 840
      FN3; Fibronectin type 3 domain
      cd00063
      Location:539 → 628
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:636 → 743
      fn3; Fibronectin type III domain
      pfam06583
      Location:1153 → 1456
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    9. XM_019949390.2 → XP_019804949.2  neogenin isoform X5

      UniProtKB/TrEMBL
      A0A2U4CHP3
      Conserved Domains (8) summary
      smart00060
      Location:759 → 838
      FN3; Fibronectin type 3 domain
      cd00063
      Location:559 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam06583
      Location:1151 → 1454
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    10. XM_033851958.1 → XP_033707849.1  neogenin isoform X11

      UniProtKB/TrEMBL
      A0A6J3R033
      Related
      ENSTTRP00000025770.1, ENSTTRT00000041204.1
      Conserved Domains (9) summary
      smart00060
      Location:739 → 818
      FN3; Fibronectin type 3 domain
      cd00063
      Location:539 → 628
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:636 → 721
      fn3; Fibronectin type III domain
      pfam06583
      Location:1131 → 1381
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    11. XM_019949406.2 → XP_019804965.2  neogenin isoform X7

      UniProtKB/TrEMBL
      A0A2U4CHR9
      Conserved Domains (8) summary
      smart00060
      Location:739 → 818
      FN3; Fibronectin type 3 domain
      cd00063
      Location:539 → 628
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam06583
      Location:1131 → 1434
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    12. XM_033851954.1 → XP_033707845.1  neogenin isoform X6

      UniProtKB/TrEMBL
      A0A6J3QZ96
      Conserved Domains (9) summary
      smart00060
      Location:740 → 819
      FN3; Fibronectin type 3 domain
      cd00063
      Location:518 → 607
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:615 → 722
      fn3; Fibronectin type III domain
      pfam06583
      Location:1132 → 1435
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:209 → 296
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:211 → 214
      Ig; Ig strand A [structural motif]
      cd05722
      Location:11 → 107
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:303 → 386
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:111 → 198
      Ig; Immunoglobulin domain
    Nucleotide Protein
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