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    AHR aryl hydrocarbon receptor [ Orcinus orca (killer whale) ]

    Gene ID: 101288192, updated on 8-Mar-2024

    Summary

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    Gene symbol
    AHR
    Gene description
    aryl hydrocarbon receptor
    See related
    EnsemblRapid:ENSOORG00010002338
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Orcinus orca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
    Orthologs
    human mouse all
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    Genomic context

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    See AHR in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 9 NC_064567.1 (69623190..69673998)

    Chromosome 9 - NC_064567.1Genomic Context describing neighboring genes Neighboring gene anterior gradient 2, protein disulphide isomerase family member Neighboring gene anterior gradient 3, protein disulphide isomerase family member Neighboring gene uncharacterized LOC125965338 Neighboring gene phosphoglycerate mutase 1-like Neighboring gene sorting nexin 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064567.1 Chromosome 9 Reference mOrcOrc1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PCB-associated changes in mRNA expression in killer whales (Orcinus orca) from the NE Pacific Ocean. Buckman AH, et al. Environ Sci Technol, 2011 Dec 1. PMID 21985468
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of aryl hydrocarbon receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aryl hydrocarbon receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mOrcOrc1.1 Primary Assembly

    Genomic

    1. NC_064567.1 Reference mOrcOrc1.1 Primary Assembly

      Range
      69623190..69673998
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004263467.4 → XP_004263515.1  aryl hydrocarbon receptor

      Related
      ENSOORP00010002335.1, ENSOORT00010003189.1
      Conserved Domains (4) summary
      cd00083
      Location:37 → 78
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      cd00130
      Location:121 → 223
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam00989
      Location:112 → 226
      PAS; PAS fold
      pfam14598
      Location:286 → 390
      PAS_11; PAS domain
    Nucleotide Protein
    Heading Accession and Version

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