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    LOC101264972 VAN3-binding protein [ Solanum lycopersicum (tomato) ]

    Gene ID: 101264972, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101264972
    Gene description
    VAN3-binding protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101264972 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 9 NC_090808.1 (60543097..60548396)
    103 previous assembly SL3.0 (GCF_000188115.4) 9 NC_015446.3 (63980120..63984533)

    Chromosome 9 - NC_090808.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase Nek2 Neighboring gene uncharacterized LOC101264669 Neighboring gene GDP-fucose transporter 1 Neighboring gene protein LIFEGUARD 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in auxin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in leaf vascular tissue pattern formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phloem or xylem histogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    VAN3-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090808.1 Reference SLM_r2.1 Primary Assembly

      Range
      60543097..60548396
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004247147.5 → XP_004247195.1  VAN3-binding protein

      UniProtKB/TrEMBL
      A0A3Q7I614
      Conserved Domains (2) summary
      pfam05703
      Location:15 → 329
      Auxin_canalis; Auxin canalization
      pfam08458
      Location:373 → 479
      PH_2; Plant pleckstrin homology-like region
    Nucleotide Protein
    Heading Accession and Version

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