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    CHL1 cell adhesion molecule L1 like [ Ovis aries (sheep) ]

    Gene ID: 101113017, updated on 10-Oct-2024

    Summary

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    Gene symbol
    CHL1
    Gene description
    cell adhesion molecule L1 like
    See related
    EnsemblRapid:ENSOARG00020015831
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ovis aries
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
    Orthologs
    human mouse all
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    Genomic context

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    See CHL1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 19 NC_056072.1 (26013104..26242346, complement)

    Chromosome 19 - NC_056072.1Genomic Context describing neighboring genes Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056072.1 Chromosome 19 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neural cell adhesion molecule L1-like protein
    Names
    cell adhesion molecule with homology to L1CAM (close homolog of L1)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Genomic

    1. NC_056072.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

      Range
      26013104..26242346 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_060402878.1 → XP_060258861.1  neural cell adhesion molecule L1-like protein isoform X3

    2. XM_060402858.1 → XP_060258841.1  neural cell adhesion molecule L1-like protein isoform X1

    3. XM_060402885.1 → XP_060258868.1  neural cell adhesion molecule L1-like protein isoform X4

    4. XM_060402862.1 → XP_060258845.1  neural cell adhesion molecule L1-like protein isoform X2

    5. XM_060402866.1 → XP_060258849.1  neural cell adhesion molecule L1-like protein isoform X3

    6. XM_015102329.3 → XP_014957815.1  neural cell adhesion molecule L1-like protein isoform X1

      UniProtKB/TrEMBL
      W5PH27
      Conserved Domains (9) summary
      smart00409
      Location:447 → 525
      IG; Immunoglobulin
      smart00410
      Location:537 → 624
      IG_like; Immunoglobulin like
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 812
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1202
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:274 → 278
      Ig; Ig strand B [structural motif]
      cd04978
      Location:348 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05845
      Location:135 → 225
      IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:262 → 344
      Ig; Immunoglobulin domain

    7. XM_060402864.1 → XP_060258847.1  neural cell adhesion molecule L1-like protein isoform X2

    8. XM_060402876.1 → XP_060258859.1  neural cell adhesion molecule L1-like protein isoform X3

    9. XM_060402854.1 → XP_060258837.1  neural cell adhesion molecule L1-like protein isoform X1

    10. XM_060402881.1 → XP_060258864.1  neural cell adhesion molecule L1-like protein isoform X3

    11. XM_060402855.1 → XP_060258838.1  neural cell adhesion molecule L1-like protein isoform X1

    12. XM_060402877.1 → XP_060258860.1  neural cell adhesion molecule L1-like protein isoform X3

    13. XM_060402859.1 → XP_060258842.1  neural cell adhesion molecule L1-like protein isoform X1

    14. XM_060402886.1 → XP_060258869.1  neural cell adhesion molecule L1-like protein isoform X4

    15. XM_060402863.1 → XP_060258846.1  neural cell adhesion molecule L1-like protein isoform X2

      Related
      ENSOARP00020020394.1, ENSOART00020024594.2

    16. XM_060402867.1 → XP_060258850.1  neural cell adhesion molecule L1-like protein isoform X3

    17. XM_042235949.1 → XP_042091883.1  neural cell adhesion molecule L1-like protein isoform X1

      UniProtKB/TrEMBL
      W5PH27
      Conserved Domains (9) summary
      smart00409
      Location:447 → 525
      IG; Immunoglobulin
      smart00410
      Location:537 → 624
      IG_like; Immunoglobulin like
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 812
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1202
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:274 → 278
      Ig; Ig strand B [structural motif]
      cd04978
      Location:348 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05845
      Location:135 → 225
      IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:262 → 344
      Ig; Immunoglobulin domain

    18. XM_060402880.1 → XP_060258863.1  neural cell adhesion molecule L1-like protein isoform X3

    19. XM_060402861.1 → XP_060258844.1  neural cell adhesion molecule L1-like protein isoform X1

    20. XM_060402872.1 → XP_060258855.1  neural cell adhesion molecule L1-like protein isoform X3

    21. XM_060402856.1 → XP_060258839.1  neural cell adhesion molecule L1-like protein isoform X1

    22. XM_060402887.1 → XP_060258870.1  neural cell adhesion molecule L1-like protein isoform X4

    23. XM_060402868.1 → XP_060258851.1  neural cell adhesion molecule L1-like protein isoform X3

    24. XM_060402852.1 → XP_060258835.1  neural cell adhesion molecule L1-like protein isoform X1

    25. XM_060402882.1 → XP_060258865.1  neural cell adhesion molecule L1-like protein isoform X3

    26. XM_060402865.1 → XP_060258848.1  neural cell adhesion molecule L1-like protein isoform X2

    27. XM_060402875.1 → XP_060258858.1  neural cell adhesion molecule L1-like protein isoform X3

    28. XM_060402857.1 → XP_060258840.1  neural cell adhesion molecule L1-like protein isoform X1

    29. XM_060402888.1 → XP_060258871.1  neural cell adhesion molecule L1-like protein isoform X4

    30. XM_060402871.1 → XP_060258854.1  neural cell adhesion molecule L1-like protein isoform X3

      Related
      ENSOARP00020020657.1, ENSOART00020024886.2

    31. XM_042235951.1 → XP_042091885.1  neural cell adhesion molecule L1-like protein isoform X1

      UniProtKB/TrEMBL
      W5PH27
      Related
      ENSOARP00020020880.2, ENSOART00020025160.2
      Conserved Domains (9) summary
      smart00409
      Location:447 → 525
      IG; Immunoglobulin
      smart00410
      Location:537 → 624
      IG_like; Immunoglobulin like
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 812
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1202
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:274 → 278
      Ig; Ig strand B [structural motif]
      cd04978
      Location:348 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05845
      Location:135 → 225
      IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:262 → 344
      Ig; Immunoglobulin domain

    32. XM_060402884.1 → XP_060258867.1  neural cell adhesion molecule L1-like protein isoform X3

    33. XM_060402853.1 → XP_060258836.1  neural cell adhesion molecule L1-like protein isoform X1

    34. XM_060402869.1 → XP_060258852.1  neural cell adhesion molecule L1-like protein isoform X3

    35. XM_060402889.1 → XP_060258872.1  neural cell adhesion molecule L1-like protein isoform X4

    36. XM_060402883.1 → XP_060258866.1  neural cell adhesion molecule L1-like protein isoform X3

    37. XM_060402870.1 → XP_060258853.1  neural cell adhesion molecule L1-like protein isoform X3

    38. XM_042235952.1 → XP_042091886.1  neural cell adhesion molecule L1-like protein isoform X1

      UniProtKB/TrEMBL
      W5PH27
      Conserved Domains (9) summary
      smart00409
      Location:447 → 525
      IG; Immunoglobulin
      smart00410
      Location:537 → 624
      IG_like; Immunoglobulin like
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 812
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1202
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:274 → 278
      Ig; Ig strand B [structural motif]
      cd04978
      Location:348 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05845
      Location:135 → 225
      IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:262 → 344
      Ig; Immunoglobulin domain

    39. XM_060402874.1 → XP_060258857.1  neural cell adhesion molecule L1-like protein isoform X3

    40. XM_060402860.1 → XP_060258843.1  neural cell adhesion molecule L1-like protein isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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