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    PHF1 PHD finger protein 1 [ Papio anubis (olive baboon) ]

    Gene ID: 101027011, updated on 8-Mar-2024

    Summary

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    Gene symbol
    PHF1
    Gene description
    PHD finger protein 1
    See related
    Ensembl:ENSPANG00000009191
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Papio anubis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
    Orthologs
    human mouse all
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    Genomic context

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    See PHF1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current Panubis1.0 (GCF_008728515.1) 6 NC_044981.1 (31754081..31759517)
    103 previous assembly Panu_3.0 (GCF_000264685.3) 4 NC_018155.2 (32774153..32780207)

    Chromosome 6 - NC_044981.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene kinesin family member C1 Neighboring gene synaptic Ras GTPase activating protein 1 Neighboring gene cutA divalent cation tolerance homolog Neighboring gene zinc finger and BTB domain containing 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PHD finger protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Panubis1.0 Primary Assembly

    Genomic

    1. NC_044981.1 Reference Panubis1.0 Primary Assembly

      Range
      31754081..31759517
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009204925.2 → XP_009203189.2  PHD finger protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A096NHI6
      Related
      ENSPANP00000012434.1, ENSPANT00000026588.3
      Conserved Domains (4) summary
      cd15500
      Location:89 → 139
      PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
      cd15582
      Location:188 → 239
      PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
      pfam14061
      Location:539 → 565
      Mtf2_C; Polycomb-like MTF2 factor 2
      cd20449
      Location:30 → 82
      Tudor_PHF1; Tudor domain found in PHD finger protein1 (PHF1) and similar proteins

    2. XM_017957797.2 → XP_017813286.1  PHD finger protein 1 isoform X2

      Conserved Domains (4) summary
      cd15500
      Location:89 → 139
      PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
      cd15582
      Location:188 → 239
      PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
      pfam14061
      Location:538 → 564
      Mtf2_C; Polycomb-like MTF2 factor 2
      cd20449
      Location:30 → 82
      Tudor_PHF1; Tudor domain found in PHD finger protein1 (PHF1) and similar proteins

    3. XM_031667046.1 → XP_031522906.1  PHD finger protein 1 isoform X7

      Conserved Domains (3) summary
      cd15500
      Location:89 → 139
      PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
      cd15582
      Location:188 → 239
      PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
      cd20449
      Location:30 → 82
      Tudor_PHF1; Tudor domain found in PHD finger protein1 (PHF1) and similar proteins

    4. XM_031667047.1 → XP_031522907.1  PHD finger protein 1 isoform X8

      Conserved Domains (4) summary
      cd15500
      Location:89 → 139
      PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
      cd15582
      Location:188 → 239
      PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
      pfam15258
      Location:333 → 426
      FAM222A; Protein family of FAM222A
      pfam18104
      Location:34 → 69
      Tudor_2; Jumonji domain-containing protein 2A Tudor domain

    5. XM_031667045.1 → XP_031522905.1  PHD finger protein 1 isoform X5

      Conserved Domains (4) summary
      cd15500
      Location:89 → 139
      PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
      cd15582
      Location:188 → 239
      PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
      pfam14061
      Location:444 → 470
      Mtf2_C; Polycomb-like MTF2 factor 2
      pfam18104
      Location:34 → 69
      Tudor_2; Jumonji domain-containing protein 2A Tudor domain

    6. XM_021936717.2 → XP_021792409.1  PHD finger protein 1 isoform X4

      Conserved Domains (4) summary
      smart00333
      Location:29 → 80
      TUDOR; Tudor domain
      cd15500
      Location:89 → 139
      PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
      pfam14061
      Location:507 → 532
      Mtf2_C; Polycomb-like MTF2 factor 2
      cl22851
      Location:188 → 206
      PHD_SF; PHD finger superfamily

    7. XM_021936716.1 → XP_021792408.1  PHD finger protein 1 isoform X3

      Conserved Domains (4) summary
      smart00333
      Location:29 → 80
      TUDOR; Tudor domain
      cd15582
      Location:156 → 207
      PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
      pfam14061
      Location:507 → 532
      Mtf2_C; Polycomb-like MTF2 factor 2
      cl22851
      Location:81 → 107
      PHD_SF; PHD finger superfamily

    8. XM_017957798.3 → XP_017813287.1  PHD finger protein 1 isoform X6

      Conserved Domains (3) summary
      cd15582
      Location:77 → 128
      PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
      pfam14061
      Location:428 → 454
      Mtf2_C; Polycomb-like MTF2 factor 2
      cl22851
      Location:2 → 28
      PHD_SF; PHD finger superfamily

    RNA

    1. XR_001901708.2 RNA Sequence

    2. XR_001901709.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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