U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    KDM4C lysine demethylase 4C [ Papio anubis (olive baboon) ]

    Gene ID: 101024524, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    KDM4C
    Gene description
    lysine demethylase 4C
    See related
    Ensembl:ENSPANG00000025200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Papio anubis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See KDM4C in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    104 current Panubis1.0 (GCF_008728515.1) 13 NC_044988.1 (35813377..36239203)
    103 previous assembly Panu_3.0 (GCF_000264685.3) 15 NC_018166.2 (68331460..68763067, complement)

    Chromosome 13 - NC_044988.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene PRELI domain containing protein 3B pseudogene Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene actin, cytoplasmic 2-like Neighboring gene cysteine-rich PDZ-binding protein Neighboring gene uncharacterized LOC116270015 Neighboring gene acyl carrier protein, mitochondrial-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K36 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    lysine-specific demethylase 4C

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Panubis1.0 Primary Assembly

    Genomic

    1. NC_044988.1 Reference Panubis1.0 Primary Assembly

      Range
      35813377..36239203
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009188789.4 → XP_009187053.1  lysine-specific demethylase 4C isoform X1

      See identical proteins and their annotated locations for XP_009187053.1

      UniProtKB/TrEMBL
      A0A8I5NAL0, A0A8I5R8Y8
      Related
      ENSPANP00000057476.1, ENSPANT00000072268.1
      Conserved Domains (5) summary
      smart00333
      Location:913 → 967
      TUDOR; Tudor domain
      pfam02373
      Location:177 → 293
      JmjC; JmjC domain, hydroxylase
      cd15577
      Location:644 → 746
      PHD_JMJD2C; PHD finger found in Jumonji domain-containing protein 2C (JMJD2C)
      cd15715
      Location:755 → 864
      ePHD_JMJD2C; Extended PHD finger found in Jumonji domain-containing protein 2C (JMJD2C)
      cl15840
      Location:16 → 57
      JmjN; jmjN domain

    2. XM_021927833.2 → XP_021783525.1  lysine-specific demethylase 4C isoform X3

      UniProtKB/TrEMBL
      A0A8I5NAL0
      Conserved Domains (4) summary
      cd15577
      Location:463 → 565
      PHD_JMJD2C; PHD finger found in Jumonji domain-containing protein 2C (JMJD2C)
      pfam02373
      Location:1 → 112
      JmjC; JmjC domain, hydroxylase
      pfam18104
      Location:793 → 827
      Tudor_2; Jumonji domain-containing protein 2A Tudor domain
      cl22851
      Location:574 → 683
      PHD_SF; PHD finger superfamily

    3. XM_021927834.2 → XP_021783526.1  lysine-specific demethylase 4C isoform X4

      Conserved Domains (4) summary
      cd15577
      Location:446 → 548
      PHD_JMJD2C; PHD finger found in Jumonji domain-containing protein 2C (JMJD2C)
      pfam02373
      Location:13 → 95
      JmjC; JmjC domain, hydroxylase
      pfam18104
      Location:776 → 810
      Tudor_2; Jumonji domain-containing protein 2A Tudor domain
      cl22851
      Location:557 → 666
      PHD_SF; PHD finger superfamily

    4. XM_003911719.5 → XP_003911768.1  lysine-specific demethylase 4C isoform X2

      UniProtKB/TrEMBL
      A0A8I5NI57, A0A8I5NIT2
      Related
      ENSPANP00000059093.1, ENSPANT00000079379.1
      Conserved Domains (5) summary
      smart00333
      Location:879 → 933
      TUDOR; Tudor domain
      pfam02373
      Location:177 → 293
      JmjC; JmjC domain, hydroxylase
      cd15577
      Location:644 → 746
      PHD_JMJD2C; PHD finger found in Jumonji domain-containing protein 2C (JMJD2C)
      cd15715
      Location:755 → 864
      ePHD_JMJD2C; Extended PHD finger found in Jumonji domain-containing protein 2C (JMJD2C)
      cl15840
      Location:16 → 57
      JmjN; jmjN domain

    5. XM_021927831.2 → XP_021783523.1  lysine-specific demethylase 4C isoform X1

      UniProtKB/TrEMBL
      A0A8I5NAL0, A0A8I5R8Y8
      Related
      ENSPANP00000053759.1, ENSPANT00000060878.1
      Conserved Domains (5) summary
      smart00333
      Location:913 → 967
      TUDOR; Tudor domain
      pfam02373
      Location:177 → 293
      JmjC; JmjC domain, hydroxylase
      cd15577
      Location:644 → 746
      PHD_JMJD2C; PHD finger found in Jumonji domain-containing protein 2C (JMJD2C)
      cd15715
      Location:755 → 864
      ePHD_JMJD2C; Extended PHD finger found in Jumonji domain-containing protein 2C (JMJD2C)
      cl15840
      Location:16 → 57
      JmjN; jmjN domain

    6. XM_031654224.1 → XP_031510084.1  lysine-specific demethylase 4C isoform X5

      Conserved Domains (3) summary
      cd15577
      Location:351 → 453
      PHD_JMJD2C; PHD finger found in Jumonji domain-containing protein 2C (JMJD2C)
      pfam18104
      Location:681 → 715
      Tudor_2; Jumonji domain-containing protein 2A Tudor domain
      cl22851
      Location:462 → 571
      PHD_SF; PHD finger superfamily

    RNA

    1. XR_004177866.1 RNA Sequence

    2. XR_004177865.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.