U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    RAD50 RAD50 double strand break repair protein [ Pan paniscus (pygmy chimpanzee) ]

    Gene ID: 100990350, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    RAD50
    Gene description
    RAD50 double strand break repair protein
    See related
    Ensembl:ENSPPAG00000029837
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan paniscus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RAD50 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 4 NC_073253.2 (127867909..127955144)
    RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 5 NC_073254.1 (126007455..126094708)

    Chromosome 4 - NC_073253.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134730375 Neighboring gene IRF1 antisense RNA 1 Neighboring gene interferon regulatory factor 1 Neighboring gene interleukin 5 Neighboring gene interleukin 13 Neighboring gene interleukin 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables G-quadruplex DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA duplex unwinding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chromosome organization involved in meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere maintenance via recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere maintenance via telomerase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Mre11 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in condensed nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA repair protein RAD50
    Names
    RAD50 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Genomic

    1. NC_073253.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

      Range
      127867909..127955144
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034960466.3 → XP_034816357.1  DNA repair protein RAD50 isoform X2

      Conserved Domains (1) summary
      TIGR00606
      Location:1 → 1213
      rad50

    2. XM_003829302.6 → XP_003829350.1  DNA repair protein RAD50 isoform X1

      See identical proteins and their annotated locations for XP_003829350.1

      UniProtKB/TrEMBL
      A0A2R9ACX5
      Related
      ENSPPAP00000013332.1
      Conserved Domains (3) summary
      TIGR00606
      Location:2 → 1312
      rad50; rad50
      cd03240
      Location:1195 → 1297
      ABC_Rad50; ATP-binding cassette domain of Rad50
      pfam04423
      Location:659 → 709
      Rad50_zn_hook; Rad50 zinc hook motif

    3. XM_055112628.2 → XP_054968603.1  DNA repair protein RAD50 isoform X2

    4. XM_034960467.2 → XP_034816358.1  DNA repair protein RAD50 isoform X3

      Conserved Domains (1) summary
      TIGR00606
      Location:1 → 1105
      rad50
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.