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    SCNN1D sodium channel epithelial 1 subunit delta [ Pan paniscus (pygmy chimpanzee) ]

    Gene ID: 100970727, updated on 3-Dec-2024

    Summary

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    Gene symbol
    SCNN1D
    Gene description
    sodium channel epithelial 1 subunit delta
    See related
    Ensembl:ENSPPAG00000039962
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan paniscus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human all
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    Genomic context

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    See SCNN1D in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 1 NC_073249.2 (226935345..226952596, complement)
    RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 1 NC_073249.1 (225632019..225649369, complement)

    Chromosome 1 - NC_073249.2Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 11 Neighboring gene pseudouridine synthase like 1 Neighboring gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 Neighboring gene ubiquitin conjugating enzyme E2 J2 Neighboring gene C1q and TNF related 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ligand-gated sodium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sodium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of sodium channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amiloride-sensitive sodium channel subunit delta
    Names
    sodium channel epithelial 1 delta subunit
    sodium channel, non-voltage-gated 1, delta subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Genomic

    1. NC_073249.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

      Range
      226935345..226952596 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063602478.1 → XP_063458548.1  amiloride-sensitive sodium channel subunit delta isoform X1

      UniProtKB/TrEMBL
      A0A2R9C6V6

    2. XM_063602479.1 → XP_063458549.1  amiloride-sensitive sodium channel subunit delta isoform X2

      UniProtKB/TrEMBL
      A0A2R9C6V6

    3. XM_034952927.3 → XP_034808818.3  amiloride-sensitive sodium channel subunit delta isoform X1

      UniProtKB/TrEMBL
      A0A2R9C6V6
    Nucleotide Protein
    Heading Accession and Version

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