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    LOC100844241 xylose isomerase [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100844241, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC100844241
    Gene description
    xylose isomerase
    Locus tag
    BRADI_1g18550v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100844241 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (14882407..14886899, complement)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (14882392..14886870, complement)

    Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene MEIOTIC F-BOX protein MOF-like Neighboring gene uncharacterized LOC100844849 Neighboring gene uncharacterized LOC112271714 Neighboring gene uncharacterized LOC100846043 Neighboring gene uncharacterized LOC112271392 Neighboring gene probable GTP-binding protein OBGC1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources. Mochida K, et al. PLoS One, 2013. PMID 24130698, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables xylose isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    xylose isomerase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      14882407..14886899 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003562448.4 → XP_003562496.1  xylose isomerase

      UniProtKB/TrEMBL
      I1GRE7
      Conserved Domains (1) summary
      PLN02923
      Location:1 → 479
      PLN02923; xylose isomerase

    2. XM_014896915.2 → XP_014752401.1  xylose isomerase

      UniProtKB/TrEMBL
      I1GRE7
      Conserved Domains (1) summary
      PLN02923
      Location:1 → 479
      PLN02923; xylose isomerase
    Nucleotide Protein Strain
    Heading Accession and Version

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