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    LOC100837736 oxysterol-binding protein-related protein 1D [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100837736, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC100837736
    Gene description
    oxysterol-binding protein-related protein 1D
    Locus tag
    BRADI_4g39060v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100837736 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (43674388..43682748)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (43856586..43864913)

    Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RGLG2 Neighboring gene alpha/beta hydrolase domain-containing protein 17B Neighboring gene probable Ufm1-specific protease Neighboring gene ultraviolet-B receptor UVR8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sterol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oxysterol-binding protein-related protein 1D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      43674388..43682748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003578663.4 → XP_003578711.1  oxysterol-binding protein-related protein 1D

      UniProtKB/TrEMBL
      I1IT81
      Conserved Domains (3) summary
      pfam00169
      Location:53 → 176
      PH; PH domain
      pfam01237
      Location:380 → 720
      Oxysterol_BP; Oxysterol-binding protein
      cl17171
      Location:51 → 181
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein Strain
    Heading Accession and Version

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