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    LOC100816988 spermine synthase [ Glycine max (soybean) ]

    Gene ID: 100816988, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100816988
    Gene description
    spermine synthase
    Locus tag
    GLYMA_04G237300v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100816988 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 4 NC_016091.4 (49406735..49412008)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 4 NC_016091.3 (50585824..50591048)

    Chromosome 4 - NC_016091.4Genomic Context describing neighboring genes Neighboring gene phosphomevalonate kinase, peroxisomal Neighboring gene protein PSK SIMULATOR 3 Neighboring gene mRNA cap guanine-N7 methyltransferase 2 Neighboring gene cyclic nucleotide-gated ion channel 1 Neighboring gene dehydrogenase/reductase SDR family member on chromosome X

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables spermidine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in spermidine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spermine synthase
    NP_001242248.2
    XP_014629847.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001255319.2 → NP_001242248.2  spermine synthase

      Status: VALIDATED

      Source sequence(s)
      ACUP04001611
      UniProtKB/TrEMBL
      C6T8Z4, I1JYT8
      Conserved Domains (1) summary
      PLN02366
      Location:38 → 358
      PLN02366; spermidine synthase

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_016091.4 Reference Glycine_max_v4.0 Primary Assembly

      Range
      49406735..49412008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014774361.3 → XP_014629847.1  spermine synthase isoform X1

      UniProtKB/TrEMBL
      C6T8Z4, I1JYT8
      Conserved Domains (1) summary
      PLN02366
      Location:38 → 358
      PLN02366; spermidine synthase

    RNA

    1. XR_001387735.3 RNA Sequence

    2. XR_005890973.1 RNA Sequence

    3. XR_005890974.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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