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    LOC100810673 lysine-specific demethylase JMJ25 [ Glycine max (soybean) ]

    Gene ID: 100810673, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC100810673
    Gene description
    lysine-specific demethylase JMJ25
    Locus tag
    GLYMA_08G060200v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100810673 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (4633276..4639815, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (4635536..4642058, complement)

    Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106799626 Neighboring gene probable serine/threonine-protein kinase abkC Neighboring gene microRNA MIR397a Neighboring gene uncharacterized LOC100803004

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase JMJ25

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      4633276..4639815 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003532516.5 → XP_003532564.1  lysine-specific demethylase JMJ25

      UniProtKB/TrEMBL
      A0A0R0IHT9, I1KQR1
      Conserved Domains (4) summary
      smart00558
      Location:706 → 755
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      pfam08879
      Location:15 → 56
      WRC
      pfam10497
      Location:266 → 322
      zf-4CXXC_R1; Zinc-finger domain of monoamine-oxidase A repressor R1
      cl40423
      Location:898 → 982
      cupin_RmlC-like; RmlC-like cupin superfamily
    Nucleotide Protein
    Heading Accession and Version

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