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    LOC100805068 uncharacterized LOC100805068 [ Glycine max (soybean) ]

    Gene ID: 100805068, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100805068
    Gene description
    uncharacterized LOC100805068
    Locus tag
    GLYMA_20G095300v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100805068 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 20 NC_038256.2 (33792136..33794253)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 20 NC_038256.1 (33832407..33834688)

    Chromosome 20 - NC_038256.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100784569 Neighboring gene alkaline/neutral invertase A, mitochondrial Neighboring gene putative pentatricopeptide repeat-containing protein At1g56570 Neighboring gene protein AGENET DOMAIN (AGD)-CONTAINING P1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA damage checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of checkpoint clamp complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100805068

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038256.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      33792136..33794253
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041013187.1 → XP_040869121.1  uncharacterized protein LOC100805068 isoform X1

      UniProtKB/TrEMBL
      I1NEX7
      Conserved Domains (1) summary
      cd00577
      Location:9 → 289
      PCNA; Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the ...

    2. XM_003555746.5 → XP_003555794.1  uncharacterized protein LOC100805068 isoform X2

      UniProtKB/TrEMBL
      I1NEX4, I1NEX7
      Conserved Domains (1) summary
      cd00577
      Location:9 → 262
      PCNA; Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the ...
    Nucleotide Protein
    Heading Accession and Version

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    Other Literature Sources
    Molecular Biology Databases