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    LOC100798333 DNA repair protein RAD16 [ Glycine max (soybean) ]

    Gene ID: 100798333, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100798333
    Gene description
    DNA repair protein RAD16
    Locus tag
    GLYMA_12G192700v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100798333 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 12 NC_038248.2 (36873711..36881181, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 12 NC_038248.1 (35420101..35427560, complement)

    Chromosome 12 - NC_038248.2Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 18 Neighboring gene B-cell receptor-associated protein 31 Neighboring gene L-ascorbate oxidase homolog Neighboring gene uncharacterized LOC100500205

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent helicase rhp16; DNA repair protein RAD16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038248.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      36873711..36881181 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003539452.5 → XP_003539500.1  DNA repair protein RAD16 isoform X2

      UniProtKB/TrEMBL
      I1LU44
      Conserved Domains (1) summary
      COG0553
      Location:178 → 924
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]

    2. XM_006592746.4 → XP_006592809.1  DNA repair protein RAD16 isoform X1

      UniProtKB/TrEMBL
      K7LVV9
      Conserved Domains (1) summary
      COG0553
      Location:179 → 925
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]

    3. XM_041007585.1 → XP_040863519.1  ATP-dependent helicase rhp16 isoform X3

      Conserved Domains (1) summary
      COG0553
      Location:35 → 781
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version

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