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    LOC100797705 probable calcium-binding protein CML16 [ Glycine max (soybean) ]

    Gene ID: 100797705, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100797705
    Gene description
    probable calcium-binding protein CML16
    Locus tag
    GLYMA_16G099600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100797705 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 16 NC_038252.2 (19385159..19386048)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 16 NC_038252.1 (19187904..19189472)

    Chromosome 16 - NC_038252.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100798756 Neighboring gene uncharacterized LOC102659754 Neighboring gene small nucleolar RNA R71 Neighboring gene putative phospholipid-transporting ATPase 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables enzyme regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable calcium-binding protein CML16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038252.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      19385159..19386048
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003547807.5 → XP_003547855.1  probable calcium-binding protein CML16

      See identical proteins and their annotated locations for XP_003547855.1

      UniProtKB/TrEMBL
      A0A0R0FYA3
      Conserved Domains (1) summary
      PTZ00184
      Location:3 → 147
      PTZ00184; calmodulin; Provisional
    Nucleotide Protein
    Heading Accession and Version

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