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    LOC100790096 pentatricopeptide repeat-containing protein At1g77360, mitochondrial [ Glycine max (soybean) ]

    Gene ID: 100790096, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100790096
    Gene description
    pentatricopeptide repeat-containing protein At1g77360, mitochondrial
    Locus tag
    GLYMA_06G116600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100790096 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (9457454..9460764)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (9487336..9490714)

    Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene amino acid permease 3 Neighboring gene auxilin-related protein 1 Neighboring gene uncharacterized LOC100527147 Neighboring gene protein translocase subunit SECA2, chloroplastic Neighboring gene uncharacterized LOC102660666

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g77360, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      9457454..9460764
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006581528.4 → XP_006581591.1  pentatricopeptide repeat-containing protein At1g77360, mitochondrial

      See identical proteins and their annotated locations for XP_006581591.1

      UniProtKB/TrEMBL
      K7KUJ8
      Conserved Domains (2) summary
      PLN03218
      Location:143 → 443
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:169 → 196
      PPR; PPR repeat [structural motif]

    2. XM_006581530.4 → XP_006581593.1  pentatricopeptide repeat-containing protein At1g77360, mitochondrial

      See identical proteins and their annotated locations for XP_006581593.1

      UniProtKB/TrEMBL
      K7KUJ8
      Conserved Domains (2) summary
      PLN03218
      Location:143 → 443
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:169 → 196
      PPR; PPR repeat [structural motif]

    3. XM_006581531.4 → XP_006581594.1  pentatricopeptide repeat-containing protein At1g77360, mitochondrial

      See identical proteins and their annotated locations for XP_006581594.1

      UniProtKB/TrEMBL
      K7KUJ8
      Conserved Domains (2) summary
      PLN03218
      Location:143 → 443
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:169 → 196
      PPR; PPR repeat [structural motif]

    4. XM_006581529.4 → XP_006581592.1  pentatricopeptide repeat-containing protein At1g77360, mitochondrial

      See identical proteins and their annotated locations for XP_006581592.1

      UniProtKB/TrEMBL
      K7KUJ8
      Conserved Domains (2) summary
      PLN03218
      Location:143 → 443
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:169 → 196
      PPR; PPR repeat [structural motif]

    5. XM_014776350.3 → XP_014631836.1  pentatricopeptide repeat-containing protein At1g77360, mitochondrial

      UniProtKB/TrEMBL
      K7KUJ8
      Conserved Domains (2) summary
      PLN03218
      Location:143 → 443
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:169 → 196
      PPR; PPR repeat [structural motif]

    6. XM_014776351.3 → XP_014631837.1  pentatricopeptide repeat-containing protein At1g77360, mitochondrial

      UniProtKB/TrEMBL
      K7KUJ8
      Conserved Domains (2) summary
      PLN03218
      Location:143 → 443
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:169 → 196
      PPR; PPR repeat [structural motif]

    7. XM_006581532.4 → XP_006581595.1  pentatricopeptide repeat-containing protein At1g77360, mitochondrial

      See identical proteins and their annotated locations for XP_006581595.1

      UniProtKB/TrEMBL
      K7KUJ8
      Conserved Domains (2) summary
      PLN03218
      Location:143 → 443
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:169 → 196
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
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