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    LOC100777711 putative RNA-binding protein Luc7-like 2 [ Glycine max (soybean) ]

    Gene ID: 100777711, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100777711
    Gene description
    putative RNA-binding protein Luc7-like 2
    Locus tag
    GLYMA_09G248800v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100777711 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 9 NC_038245.2 (47386782..47392897)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 9 NC_038245.1 (47002112..47008216)

    Chromosome 9 - NC_038245.2Genomic Context describing neighboring genes Neighboring gene calreticulin-3 Neighboring gene UPF0510 protein INM02-like Neighboring gene uncharacterized LOC112997801 Neighboring gene biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative RNA-binding protein Luc7-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038245.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      47386782..47392897
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003534454.4 → XP_003534502.1  putative RNA-binding protein Luc7-like 2

      UniProtKB/TrEMBL
      I1L690
      Conserved Domains (2) summary
      TIGR01642
      Location:326 → 413
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
      cl27291
      Location:2 → 328
      LUC7; LUC7 N_terminus
    Nucleotide Protein
    Heading Accession and Version

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