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    LOC100756524 tripartite motif-containing protein 60 [ Cricetulus griseus (Chinese hamster) ]

    Gene ID: 100756524, updated on 19-Dec-2023

    Summary

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    Gene symbol
    LOC100756524
    Gene description
    tripartite motif-containing protein 60
    See related
    Ensembl:ENSCGRG00015038064
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cricetulus griseus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
    Also known as
    Trim60
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    Genomic context

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    See LOC100756524 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613758.1 (453218..454630)
    104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276806.1 (242256815..242258227, complement)

    NW_003613758.1Genomic Context describing neighboring genes Neighboring gene apelin receptor early endogenous ligand Neighboring gene tripartite motif-containing protein 60 Neighboring gene tripartite motif-containing protein 75-like Neighboring gene transmembrane protein 192

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 60
    Names
    tripartite motif containing 60

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CriGri_1.0 Primary Assembly

    Genomic

    1. NW_003613758.1 Reference CriGri_1.0 Primary Assembly

      Range
      453218..454630
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035454163.1 → XP_035310054.1  tripartite motif-containing protein 60

      UniProtKB/TrEMBL
      G3H6P6
      Conserved Domains (5) summary
      PRK03918
      Location:135 → 243
      PRK03918; DNA double-strand break repair ATPase Rad50
      cd15828
      Location:286 → 465
      SPRY_PRY_TRIM60; PRY/SPRY domain of tripartite motif-binding protein 60 (TRIM60) also known as RING finger protein 33 (RNF33)
      cd00162
      Location:15 → 55
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:97 → 133
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:14 → 55
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    Alternate CriGri-PICRH-1.0

    Genomic

    1. NW_023276806.1 Alternate CriGri-PICRH-1.0

      Range
      242256815..242258227 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035451447.1 → XP_035307338.1  tripartite motif-containing protein 60

      UniProtKB/TrEMBL
      G3H6P6
      Related
      ENSCGRP00015046926.1, ENSCGRT00015066778.1
      Conserved Domains (5) summary
      PRK03918
      Location:135 → 243
      PRK03918; DNA double-strand break repair ATPase Rad50
      cd15828
      Location:286 → 465
      SPRY_PRY_TRIM60; PRY/SPRY domain of tripartite motif-binding protein 60 (TRIM60) also known as RING finger protein 33 (RNF33)
      cd00162
      Location:15 → 55
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:97 → 133
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:14 → 55
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein Strain
    Heading Accession and Version

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