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    LOC100738134 zinc finger protein 501 [ Sus scrofa (pig) ]

    Gene ID: 100738134, updated on 16-Nov-2023

    Summary

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    Gene symbol
    LOC100738134
    Gene description
    zinc finger protein 501
    See related
    Ensembl:ENSSSCG00000011306 Ensembl:ENSSSCG00000011307
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 1.2), spleen (RPKM 0.5) and 8 other tissues See more
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    Genomic context

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    See LOC100738134 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (27930889..27958202)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (30745718..30798201)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene zinc finger protein 197 Neighboring gene zinc finger protein 35 Neighboring gene KIAA1143 Neighboring gene kinesin family member 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 501; zinc finger protein 502

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      27930889..27958202
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021071740.1 → XP_020927399.1  zinc finger protein 502 isoform X3

      Conserved Domains (2) summary
      COG5048
      Location:380 → 796
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:328 → 348
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_013981539.2 → XP_013836993.1  zinc finger protein 502 isoform X1

      UniProtKB/TrEMBL
      A0A286ZVW7, A0A8D1F6D1, F1SRB1
      Related
      ENSSSCP00000035782.2, ENSSSCT00000050152.2
      Conserved Domains (2) summary
      COG5048
      Location:146 → 534
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:321 → 341
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_013981538.2 → XP_013836992.1  zinc finger protein 502 isoform X1

      UniProtKB/TrEMBL
      A0A286ZVW7, A0A8D1F6D1, F1SRB1
      Conserved Domains (2) summary
      COG5048
      Location:146 → 534
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:321 → 341
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_013981548.2 → XP_013837002.1  zinc finger protein 501 isoform X2

      UniProtKB/TrEMBL
      A0A4X1TCP5, F1SRB0
      Conserved Domains (2) summary
      COG5048
      Location:20 → 256
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:80 → 100
      ZF_C2H2; C2H2 Zn finger [structural motif]

    5. XM_021071735.1 → XP_020927394.1  zinc finger protein 502 isoform X1

      UniProtKB/TrEMBL
      A0A286ZVW7, A0A8D1F6D1, F1SRB1
      Conserved Domains (2) summary
      COG5048
      Location:146 → 534
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:321 → 341
      ZF_C2H2; C2H2 Zn finger [structural motif]

    6. XM_021071737.1 → XP_020927396.1  zinc finger protein 501 isoform X2

      UniProtKB/TrEMBL
      A0A4X1TCP5, F1SRB0
      Conserved Domains (2) summary
      COG5048
      Location:20 → 256
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:80 → 100
      ZF_C2H2; C2H2 Zn finger [structural motif]

    7. XM_021071736.1 → XP_020927395.1  zinc finger protein 501 isoform X2

      UniProtKB/TrEMBL
      A0A4X1TCP5, F1SRB0
      Related
      ENSSSCP00000049780.1, ENSSSCT00000063372.3
      Conserved Domains (2) summary
      COG5048
      Location:20 → 256
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:80 → 100
      ZF_C2H2; C2H2 Zn finger [structural motif]

    8. XM_013981541.2 → XP_013836995.1  zinc finger protein 501 isoform X2

      UniProtKB/TrEMBL
      A0A4X1TCP5, F1SRB0
      Conserved Domains (2) summary
      COG5048
      Location:20 → 256
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:80 → 100
      ZF_C2H2; C2H2 Zn finger [structural motif]

    9. XM_013981543.2 → XP_013836997.1  zinc finger protein 501 isoform X2

      UniProtKB/TrEMBL
      A0A4X1TCP5, F1SRB0
      Conserved Domains (2) summary
      COG5048
      Location:20 → 256
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:80 → 100
      ZF_C2H2; C2H2 Zn finger [structural motif]

    10. XM_013981547.2 → XP_013837001.1  zinc finger protein 501 isoform X2

      UniProtKB/TrEMBL
      A0A4X1TCP5, F1SRB0
      Conserved Domains (2) summary
      COG5048
      Location:20 → 256
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:80 → 100
      ZF_C2H2; C2H2 Zn finger [structural motif]

    11. XM_013981544.2 → XP_013836998.1  zinc finger protein 501 isoform X2

      UniProtKB/TrEMBL
      A0A4X1TCP5, F1SRB0
      Conserved Domains (2) summary
      COG5048
      Location:20 → 256
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:80 → 100
      ZF_C2H2; C2H2 Zn finger [structural motif]

    12. XM_021071738.1 → XP_020927397.1  zinc finger protein 501 isoform X2

      UniProtKB/TrEMBL
      A0A4X1TCP5, F1SRB0
      Conserved Domains (2) summary
      COG5048
      Location:20 → 256
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:80 → 100
      ZF_C2H2; C2H2 Zn finger [structural motif]

    13. XM_021071739.1 → XP_020927398.1  zinc finger protein 501 isoform X2

      UniProtKB/TrEMBL
      A0A4X1TCP5, F1SRB0
      Related
      ENSSSCP00000012055.2, ENSSSCT00000012378.5
      Conserved Domains (2) summary
      COG5048
      Location:20 → 256
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:80 → 100
      ZF_C2H2; C2H2 Zn finger [structural motif]

    14. XM_013981546.2 → XP_013837000.1  zinc finger protein 501 isoform X2

      UniProtKB/TrEMBL
      A0A4X1TCP5, F1SRB0
      Conserved Domains (2) summary
      COG5048
      Location:20 → 256
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:80 → 100
      ZF_C2H2; C2H2 Zn finger [structural motif]

    15. XM_013981545.2 → XP_013836999.1  zinc finger protein 501 isoform X2

      UniProtKB/TrEMBL
      A0A4X1TCP5, F1SRB0
      Conserved Domains (2) summary
      COG5048
      Location:20 → 256
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:80 → 100
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RNA

    1. XR_002338258.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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