U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    COL6A3 collagen type VI alpha 3 chain [ Nomascus leucogenys (northern white-cheeked gibbon) ]

    Gene ID: 100590247, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    COL6A3
    Gene description
    collagen type VI alpha 3 chain
    See related
    EnsemblRapid:ENSNLEG00000010790
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nomascus leucogenys
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See COL6A3 in Genome Data Viewer
    Location:
    chromosome: 22a
    Exon count:
    44
    Annotation release Status Assembly Chr Location
    103 current Asia_NLE_v1 (GCF_006542625.1) 22a NC_044402.1 (137742923..137834081, complement)
    102 previous assembly Nleu_3.0 (GCF_000146795.2) 22a NC_019837.1 (128514112..128537250, complement)

    Chromosome 22a - NC_044402.1Genomic Context describing neighboring genes Neighboring gene COP9 signalosome subunit 8 Neighboring gene uncharacterized LOC115832494 Neighboring gene melanophilin Neighboring gene prolactin releasing hormone

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    collagen alpha-3(VI) chain
    Names
    collagen, type VI, alpha 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Asia_NLE_v1 Primary Assembly

    Genomic

    1. NC_044402.1 Reference Asia_NLE_v1 Primary Assembly

      Range
      137742923..137834081 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030802861.1 → XP_030658721.1  collagen alpha-3(VI) chain isoform X2

      UniProtKB/TrEMBL
      G1RJF1
      Related
      ENSNLEP00000013358.3, ENSNLET00000014012.3
      Conserved Domains (7) summary
      pfam01391
      Location:2106 → 2165
      Collagen; Collagen triple helix repeat (20 copies)
      smart00060
      Location:2786 → 2854
      FN3; Fibronectin type 3 domain
      smart00327
      Location:1633 → 1789
      VWA; von Willebrand factor (vWF) type A domain
      cd01481
      Location:1230 → 1394
      vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
      pfam00014
      Location:2904 → 2955
      Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
      pfam00092
      Location:1434 → 1606
      VWA; von Willebrand factor type A domain
      cl00057
      Location:823 → 986
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    2. XM_030802859.1 → XP_030658719.1  collagen alpha-3(VI) chain isoform X1

      UniProtKB/TrEMBL
      G1RJF0
      Related
      ENSNLEP00000013357.2, ENSNLET00000014011.3
      Conserved Domains (7) summary
      pfam01391
      Location:2312 → 2371
      Collagen; Collagen triple helix repeat (20 copies)
      smart00060
      Location:2992 → 3060
      FN3; Fibronectin type 3 domain
      smart00327
      Location:1839 → 1995
      VWA; von Willebrand factor (vWF) type A domain
      cd01481
      Location:1436 → 1600
      vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
      pfam00014
      Location:3110 → 3161
      Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
      pfam00092
      Location:1640 → 1812
      VWA; von Willebrand factor type A domain
      cl00057
      Location:1029 → 1192
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    3. XM_030802862.1 → XP_030658722.1  collagen alpha-3(VI) chain isoform X3

      UniProtKB/TrEMBL
      A0A2I3H3W7
      Related
      ENSNLEP00000038162.2, ENSNLET00000051902.2
      Conserved Domains (7) summary
      pfam01391
      Location:1705 → 1764
      Collagen; Collagen triple helix repeat (20 copies)
      smart00060
      Location:2385 → 2453
      FN3; Fibronectin type 3 domain
      smart00327
      Location:1232 → 1388
      VWA; von Willebrand factor (vWF) type A domain
      cd01481
      Location:829 → 993
      vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
      pfam00014
      Location:2503 → 2554
      Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
      pfam00092
      Location:1033 → 1205
      VWA; von Willebrand factor type A domain
      cl00057
      Location:422 → 585
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    4. XM_030802863.1 → XP_030658723.1  collagen alpha-3(VI) chain isoform X4

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.