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    BHLHE40 basic helix-loop-helix family member e40 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

    Gene ID: 100588063, updated on 8-Mar-2024

    Summary

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    Gene symbol
    BHLHE40
    Gene description
    basic helix-loop-helix family member e40
    See related
    EnsemblRapid:ENSNLEG00000041438
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nomascus leucogenys
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
    Orthologs
    human mouse all
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    Genomic context

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    See BHLHE40 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Asia_NLE_v1 (GCF_006542625.1) 21 NC_044401.1 (60220190..60226168, complement)
    102 previous assembly Nleu_3.0 (GCF_000146795.2) 21 NC_019836.1 (63065342..63071115, complement)

    Chromosome 21 - NC_044401.1Genomic Context describing neighboring genes Neighboring gene ARF like GTPase 8B Neighboring gene nucleolar transcription factor 1-like Neighboring gene uncharacterized LOC100588387 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC105738826 Neighboring gene inositol 1,4,5-trisphosphate receptor type 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anterior/posterior pattern specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in circadian regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of neurogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    class E basic helix-loop-helix protein 40

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Asia_NLE_v1 Primary Assembly

    Genomic

    1. NC_044401.1 Reference Asia_NLE_v1 Primary Assembly

      Range
      60220190..60226168 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003264924.4 → XP_003264972.1  class E basic helix-loop-helix protein 40

      UniProtKB/TrEMBL
      G1QU41, M3Z9H4
      Related
      ENSNLEP00000055735.1, ENSNLET00000072310.1
      Conserved Domains (2) summary
      smart00511
      Location:140 → 184
      ORANGE; Orange domain
      cd19749
      Location:40 → 129
      bHLH-O_DEC1; basic helix-loop-helix-orange (bHLH-O) domain found in differentially expressed in chondrocytes protein 1 (DEC1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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