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    5430416N02Rik RIKEN cDNA 5430416N02 gene [ Mus musculus (house mouse) ]

    Gene ID: 100503199, updated on 9-Dec-2024

    Summary

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    Official Symbol
    5430416N02Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 5430416N02 geneprovided by MGI
    Primary source
    MGI:MGI:1918676
    See related
    Ensembl:ENSMUSG00000097772 AllianceGenome:MGI:1918676
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm3514; Adapt33; 100041797
    Summary
    Acts upstream of or within response to wounding. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in CNS E11.5 (RPKM 44.1), CNS E14 (RPKM 23.8) and 18 other tissues See more
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    Genomic context

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    See 5430416N02Rik in Genome Data Viewer
    Location:
    5 E4; 5 48.48 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (100568701..100577394, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (100420842..100429535, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 45913 Neighboring gene SEC31 homolog A, COPII coat complex component Neighboring gene STARR-positive B cell enhancer ABC_E2162 Neighboring gene lin-54 DREAM MuvB core complex component Neighboring gene STARR-seq mESC enhancer starr_13725 Neighboring gene STARR-seq mESC enhancer starr_13727 Neighboring gene predicted gene, 19620

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. adapt33, a novel oxidant-inducible RNA from hamster HA-1 cells. Wang Y, et al. Arch Biochem Biophys, 1996 Aug 15. PMID 8806733
    2. Characterization of adapt33, a stress-inducible riboregulator. Wang Y, et al. Gene Expr, 2003. PMID 12837039, Free PMC Article
    3. lncRNA 5430416N02Rik Promotes the Proliferation of Mouse Embryonic Stem Cells by Activating Mid1 Expression through 3D Chromatin Architecture. Zhao T, et al. Stem Cell Reports, 2020 Mar 10. PMID 32160522, Free PMC Article
    4. lincRNAs act in the circuitry controlling pluripotency and differentiation. Guttman M, et al. Nature, 2011 Aug 28. PMID 21874018, Free PMC Article
    5. Identification of candidate long non-coding RNAs in response to myocardial infarction. Zangrando J, et al. BMC Genomics, 2014 Jun 10. PMID 24917243, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. lncRNA 5430416N02Rik Promotes the Proliferation of Mouse Embryonic Stem Cells by Activating Mid1 Expression through 3D Chromatin Architecture.
      Title: lncRNA 5430416N02Rik Promotes the Proliferation of Mouse Embryonic Stem Cells by Activating Mid1 Expression through 3D Chromatin Architecture.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Other Names

    • adaptive response 33

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034038.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK017316, BX516247
      Related
      ENSMUST00000326634.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      100568701..100577394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.