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    Armcx4 armadillo repeat containing, X-linked 4 [ Mus musculus (house mouse) ]

    Gene ID: 100503043, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Armcx4provided by MGI
    Official Full Name
    armadillo repeat containing, X-linked 4provided by MGI
    Primary source
    MGI:MGI:2147887
    See related
    Ensembl:ENSMUSG00000049804 AllianceGenome:MGI:2147887
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm195
    Summary
    Orthologous to human ARMCX4 (armadillo repeat containing X-linked 4). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in CNS E11.5 (RPKM 14.1), CNS E14 (RPKM 11.0) and 12 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Armcx4 in Genome Data Viewer
    Location:
    X E3; X 56.23 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (133586399..133598524)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (134685650..134697775)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 19502 Neighboring gene STARR-seq mESC enhancer starr_47965 Neighboring gene RIKEN cDNA B230119M05 gene Neighboring gene 60S ribosomal protein L34 pseudogene Neighboring gene STARR-seq mESC enhancer starr_47966 Neighboring gene armadillo repeat containing, X-linked 1 Neighboring gene armadillo repeat containing, X-linked 7, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Human X chromosome exome sequencing identifies BCORL1 as contributor to spermatogenesis. Lu C, et al. J Med Genet, 2021 Jan. PMID 32376790
    2. Majority of cerebrospinal fluid-contacting neurons in the spinal cord of C57Bl/6N mice is present in ectopic position unlike in other studied experimental mice strains and mammalian species. Tonelli Gombalová Z, et al. J Comp Neurol, 2020 Oct 15. PMID 32212159
    3. Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders. Li J, et al. Nat Neurosci, 2017 Aug. PMID 28671696, Free PMC Article
    4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Human X chromosome exome sequencing identifies BCORL1 as contributor to spermatogenesis.
      Title: Human X chromosome exome sequencing identifies BCORL1 as contributor to spermatogenesis.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    armadillo repeat-containing X-linked protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001202500.3 → NP_001189429.2  armadillo repeat-containing X-linked protein 4

      See identical proteins and their annotated locations for NP_001189429.2

      Status: VALIDATED

      Source sequence(s)
      BX004852, CJ167759, CJ177091
      Consensus CDS
      CCDS57773.1
      UniProtKB/TrEMBL
      E9PWM3
      Related
      ENSMUSP00000132914.2, ENSMUST00000124226.3
      Conserved Domains (3) summary
      pfam05109
      Location:424 → 797
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam04826
      Location:2098 → 2349
      Arm_2; Armadillo-like
      pfam05701
      Location:109 → 254
      WEMBL; Weak chloroplast movement under blue light

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      133586399..133598524
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528470.4 → XP_006528533.1  armadillo repeat-containing X-linked protein 4 isoform X1

      See identical proteins and their annotated locations for XP_006528533.1

      UniProtKB/TrEMBL
      E9PWM3
      Conserved Domains (3) summary
      pfam05109
      Location:424 → 797
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam04826
      Location:2098 → 2349
      Arm_2; Armadillo-like
      pfam05701
      Location:109 → 254
      WEMBL; Weak chloroplast movement under blue light

    2. XM_006528469.5 → XP_006528532.1  armadillo repeat-containing X-linked protein 4 isoform X1

      See identical proteins and their annotated locations for XP_006528532.1

      UniProtKB/TrEMBL
      E9PWM3
      Conserved Domains (3) summary
      pfam05109
      Location:424 → 797
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam04826
      Location:2098 → 2349
      Arm_2; Armadillo-like
      pfam05701
      Location:109 → 254
      WEMBL; Weak chloroplast movement under blue light

    3. XM_036161748.1 → XP_036017641.1  armadillo repeat-containing X-linked protein 4 isoform X2

      Conserved Domains (3) summary
      pfam04826
      Location:2035 → 2286
      Arm_2; Armadillo-like
      NF033609
      Location:377 → 745
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
      NF033849
      Location:1106 → 1272
      ser_rich_anae_1; serine-rich protein

    4. XM_006528472.5 → XP_006528535.1  armadillo repeat-containing X-linked protein 4 isoform X1

      See identical proteins and their annotated locations for XP_006528535.1

      UniProtKB/TrEMBL
      E9PWM3
      Conserved Domains (3) summary
      pfam05109
      Location:424 → 797
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam04826
      Location:2098 → 2349
      Arm_2; Armadillo-like
      pfam05701
      Location:109 → 254
      WEMBL; Weak chloroplast movement under blue light

    5. XM_006528473.5 → XP_006528536.1  armadillo repeat-containing X-linked protein 4 isoform X2

      Conserved Domains (3) summary
      pfam04826
      Location:2035 → 2286
      Arm_2; Armadillo-like
      NF033609
      Location:377 → 745
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
      NF033849
      Location:1106 → 1272
      ser_rich_anae_1; serine-rich protein

    6. XM_006528468.5 → XP_006528531.1  armadillo repeat-containing X-linked protein 4 isoform X1

      See identical proteins and their annotated locations for XP_006528531.1

      UniProtKB/TrEMBL
      E9PWM3
      Conserved Domains (3) summary
      pfam05109
      Location:424 → 797
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam04826
      Location:2098 → 2349
      Arm_2; Armadillo-like
      pfam05701
      Location:109 → 254
      WEMBL; Weak chloroplast movement under blue light

    7. XM_030251173.2 → XP_030107033.1  armadillo repeat-containing X-linked protein 4 isoform X2

      Conserved Domains (3) summary
      pfam04826
      Location:2035 → 2286
      Arm_2; Armadillo-like
      NF033609
      Location:377 → 745
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
      NF033849
      Location:1106 → 1272
      ser_rich_anae_1; serine-rich protein
    Nucleotide Protein Strain
    Heading Accession and Version

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