U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    C2h1orf162 similar to human chromosome 1 open reading frame 162 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100363228, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    C2h1orf162provided by RGD
    Official Full Name
    similar to human chromosome 1 open reading frame 162provided by RGD
    Primary source
    RGD:2323412
    See related
    EnsemblRapid:ENSRNOG00000070434 AllianceGenome:RGD:2323412
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 74.4), Testes (RPKM 49.4) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See C2h1orf162 in Genome Data Viewer
    Location:
    2q34
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (196101669..196107404, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (193410730..193420824, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (208554849..208562862, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene transmembrane and immunoglobulin domain containing 3 Neighboring gene SUB1 regulator of transcription, pseudogene 4 Neighboring gene adenosine A3 receptor Neighboring gene ATP synthase peripheral stalk-membrane subunit b Neighboring gene WD repeat domain 77

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    similar to human chromosome 1 open reading frame 162; transmembrane protein C1orf162 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001433319.1 → NP_001420248.1  similar to human chromosome 1 open reading frame 162

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A0A8I6A9C0

    RNA

    1. NR_197352.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002

    2. NR_197353.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002

    3. NR_197354.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002

    4. NR_197355.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      196101669..196107404 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017591328.3 → XP_017446817.1  transmembrane protein C1orf162 homolog

    2. XM_039103822.2 → XP_038959750.1  transmembrane protein C1orf162 homolog

      UniProtKB/TrEMBL
      A0A8I6A9C0
      Related
      ENSRNOP00000112038.1, ENSRNOT00000173886.1

    3. XM_039103821.2 → XP_038959749.1  transmembrane protein C1orf162 homolog

      UniProtKB/TrEMBL
      A0A8I6A9C0
      Related
      ENSRNOP00000111119.1, ENSRNOT00000130088.1

    4. XM_063282745.1 → XP_063138815.1  transmembrane protein C1orf162 homolog

      UniProtKB/TrEMBL
      A0A8I6A9C0
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.