U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Fam228b family with sequence similarity 228, member B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100363146, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Fam228bprovided by RGD
    Official Full Name
    family with sequence similarity 228, member Bprovided by RGD
    Primary source
    RGD:2324744
    See related
    EnsemblRapid:ENSRNOG00000049615 AllianceGenome:RGD:2324744
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human FAM228B (family with sequence similarity 228 member B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 42.1), Kidney (RPKM 17.8) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Fam228b in Genome Data Viewer
    Location:
    6q14
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (33473949..33505833, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (27754505..27786578, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (30037995..30070395)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene intersectin 2 Neighboring gene ribosomal protein L29, pseudogene 6 Neighboring gene family with sequence similarity 228, member A Neighboring gene uncharacterized LOC134479113 Neighboring gene profilin family, member 4 Neighboring gene tumor protein p53 inducible protein 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein FAM228B

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419693.1 → NP_001406622.1  protein FAM228B

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A0A8I6AEM4, M0R8F7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      33473949..33505833 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063261377.1 → XP_063117447.1  protein FAM228B isoform X6

    2. XM_063261378.1 → XP_063117448.1  protein FAM228B isoform X7

    3. XM_008764566.4 → XP_008762788.2  protein FAM228B isoform X5

      UniProtKB/TrEMBL
      M0R8F7
      Related
      ENSRNOP00000065753.2, ENSRNOT00000072340.3

    4. XM_008764562.4 → XP_008762784.2  protein FAM228B isoform X1

      UniProtKB/TrEMBL
      M0R8F7

    5. XM_008764561.4 → XP_008762783.2  protein FAM228B isoform X1

      UniProtKB/TrEMBL
      M0R8F7

    6. XM_008764565.4 → XP_008762787.2  protein FAM228B isoform X4

      UniProtKB/TrEMBL
      M0R8F7

    7. XM_063261376.1 → XP_063117446.1  protein FAM228B isoform X3

      UniProtKB/TrEMBL
      A0A8I6GC04

    8. XM_063261375.1 → XP_063117445.1  protein FAM228B isoform X2

      UniProtKB/TrEMBL
      A0A8I6AEM4, M0R8F7
      Related
      ENSRNOP00000091958.1, ENSRNOT00000114842.2

    RNA

    1. XR_010052049.1 RNA Sequence

    2. XR_005505743.2 RNA Sequence

    3. XR_005505744.2 RNA Sequence

    4. XR_010052050.1 RNA Sequence

    5. XR_010052048.1 RNA Sequence

    6. XR_010052047.1 RNA Sequence

    7. XR_592927.4 RNA Sequence

    8. XR_010052045.1 RNA Sequence

    9. XR_010052044.1 RNA Sequence

    10. XR_005505741.2 RNA Sequence

    11. XR_010052046.1 RNA Sequence

    12. XR_005505740.2 RNA Sequence

    13. XR_005505745.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.