U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    ICAM5 intercellular adhesion molecule 5 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100328960, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    ICAM5
    Gene description
    intercellular adhesion molecule 5
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ICAM5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) Unplaced Scaffold NW_026259267.1 (750162..756396)

    NW_026259267.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L4 Neighboring gene intercellular adhesion molecule 1 Neighboring gene ferredoxin 2 Neighboring gene ribonucleoprotein, PTB binding 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_026259267 Unplaced Scaffold Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. An ICAM-related neuronal glycoprotein, telencephalin, with brain segment-specific expression. Yoshihara Y, et al. Neuron, 1994 Mar. PMID 7794412
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables integrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    intercellular adhesion molecule 5
    Names
    ICAM-5
    intercellular adhesion molecule 5, telencephalin
    telencephalin

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001171150.1 → NP_001164621.1  intercellular adhesion molecule 5 precursor

      See identical proteins and their annotated locations for NP_001164621.1

      Status: PROVISIONAL

      Source sequence(s)
      L13199
      UniProtKB/Swiss-Prot
      Q28730
      Conserved Domains (6) summary
      smart00408
      Location:753 → 813
      IGc2; Immunoglobulin C-2 Type
      pfam03921
      Location:30 → 101
      ICAM_N; Intercellular adhesion molecule (ICAM), N-terminal domain
      pfam13895
      Location:319 → 388
      Ig_2; Immunoglobulin domain
      pfam13927
      Location:494 → 550
      Ig_3; Immunoglobulin domain
      cd00096
      Location:116 → 123
      Ig; Ig strand A [structural motif]
      cl11960
      Location:116 → 216
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NW_026259267.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      750162..756396
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q28730.1 GenPept UniProtKB/Swiss-Prot:Q28730

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials