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    LOC100263358 copper chaperone for superoxide dismutase, chloroplastic/cytosolic [ Vitis vinifera (wine grape) ]

    Gene ID: 100263358, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100263358
    Gene description
    copper chaperone for superoxide dismutase, chloroplastic/cytosolic
    Locus tag
    VIT_00019902001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    CCS
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    Genomic context

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    See LOC100263358 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 2 NC_081806.1 (4182517..4189570)
    102 previous assembly 12X (GCF_000003745.3) 2 NC_012008.3 (4357327..4364358)

    Chromosome 2 - NC_081806.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease Neighboring gene subtilisin-like protease 4 Neighboring gene nudix hydrolase 14, chloroplastic-like Neighboring gene geraniol 8-hydroxylase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables superoxide dismutase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in removal of superoxide radicals IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    copper chaperone for superoxide dismutase, chloroplastic/cytosolic
    Names
    Cu/Zn-superoxide dismutase copper chaperone

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081806.1 Reference ASM3070453v1 Primary Assembly

      Range
      4182517..4189570
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002281814.5 → XP_002281850.1  copper chaperone for superoxide dismutase, chloroplastic/cytosolic

      UniProtKB/TrEMBL
      K4HPH0
      Conserved Domains (3) summary
      PLN02957
      Location:85 → 322
      PLN02957; copper, zinc superoxide dismutase
      cd00371
      Location:93 → 152
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
      pfam00080
      Location:175 → 289
      Sod_Cu; Copper/zinc superoxide dismutase (SODC)
    Nucleotide Protein
    Heading Accession and Version

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