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    LOC100257232 UDP-glucuronic acid decarboxylase 2 [ Vitis vinifera (wine grape) ]

    Gene ID: 100257232, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100257232
    Gene description
    UDP-glucuronic acid decarboxylase 2
    Locus tag
    VIT_00028014001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100257232 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 7 NC_081811.1 (3581693..3585638)
    102 previous assembly 12X (GCF_000003745.3) 7 NC_012013.3 (3200801..3204735)

    Chromosome 7 - NC_081811.1Genomic Context describing neighboring genes Neighboring gene peter Pan-like protein Neighboring gene pectinesterase inhibitor 6 Neighboring gene uncharacterized LOC100258827 Neighboring gene caffeoylshikimate esterase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD+ binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables UDP-glucuronate decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in D-xylose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-glucuronic acid decarboxylase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081811.1 Reference ASM3070453v1 Primary Assembly

      Range
      3581693..3585638
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002268751.5 → XP_002268787.1  UDP-glucuronic acid decarboxylase 2

      UniProtKB/TrEMBL
      F6HZ52
      Conserved Domains (2) summary
      PLN02206
      Location:1 → 434
      PLN02206; UDP-glucuronate decarboxylase
      cd05230
      Location:120 → 422
      UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs
    Nucleotide Protein
    Heading Accession and Version

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