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    LOC100256584 uncharacterized LOC100256584 [ Vitis vinifera (wine grape) ]

    Gene ID: 100256584, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100256584
    Gene description
    uncharacterized LOC100256584
    Locus tag
    VIT_00003310001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100256584 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 7 NC_081811.1 (16175169..16175942)
    102 previous assembly 12X (GCF_000003745.3) Unplaced Scaffold NW_003724207.1 (259574..260347)

    Chromosome 7 - NC_081811.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100852917 Neighboring gene probable methyltransferase PMT14 Neighboring gene uncharacterized LOC104878108 Neighboring gene uncharacterized LOC132254017

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA damage checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of checkpoint clamp complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100256584

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081811.1 Reference ASM3070453v1 Primary Assembly

      Range
      16175169..16175942
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002262957.1 → XP_002262993.1  uncharacterized protein LOC100256584

      UniProtKB/TrEMBL
      F6I6Z2
      Conserved Domains (2) summary
      pfam00281
      Location:222 → 256
      Ribosomal_L5; Ribosomal protein L5
      cl24017
      Location:39 → 230
      PCNA; Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the ...
    Nucleotide Protein
    Heading Accession and Version

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