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    LOC100256416 glycine-rich RNA-binding protein RZ1A [ Vitis vinifera (wine grape) ]

    Gene ID: 100256416, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC100256416
    Gene description
    glycine-rich RNA-binding protein RZ1A
    Locus tag
    VIT_00001672001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100256416 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (14188987..14193886)
    102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (14130836..14135780)

    Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene protein MITOFERRINLIKE 1, chloroplastic Neighboring gene 36.4 kDa proline-rich protein Neighboring gene U-box domain-containing protein 27 Neighboring gene PH, RCC1 and FYVE domains-containing protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycine-rich RNA-binding protein RZ1A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

      Range
      14188987..14193886
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010666675.3 → XP_010664977.2  glycine-rich RNA-binding protein RZ1A isoform X4

      UniProtKB/TrEMBL
      F6HW88

    2. XM_059735061.1 → XP_059591044.1  glycine-rich RNA-binding protein RZ1A isoform X1

      UniProtKB/TrEMBL
      F6HW88

    3. XM_010666676.3 → XP_010664978.2  glycine-rich RNA-binding protein RZ1A isoform X2

      UniProtKB/TrEMBL
      F6HW88

    4. XM_003634445.4 → XP_003634493.2  glycine-rich RNA-binding protein RZ1A isoform X3

      UniProtKB/TrEMBL
      F6HW88

    5. XM_002263986.5 → XP_002264022.1  glycine-rich RNA-binding protein RZ1A isoform X5

      See identical proteins and their annotated locations for XP_002264022.1

      UniProtKB/TrEMBL
      A0A438CMH5
      Conserved Domains (2) summary
      smart00343
      Location:126 → 141
      ZnF_C2HC; zinc finger
      cd21608
      Location:8 → 83
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins

    6. XM_010666678.3 → XP_010664980.1  glycine-rich RNA-binding protein RZ1A isoform X5

      See identical proteins and their annotated locations for XP_010664980.1

      UniProtKB/TrEMBL
      A0A438CMH5
      Conserved Domains (2) summary
      smart00343
      Location:126 → 141
      ZnF_C2HC; zinc finger
      cd21608
      Location:8 → 83
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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