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    LOC100254714 uncharacterized LOC100254714 [ Vitis vinifera (wine grape) ]

    Gene ID: 100254714, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100254714
    Gene description
    uncharacterized LOC100254714
    Locus tag
    VIT_00019063001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100254714 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 4 NC_081808.1 (18667368..18677228, complement)
    102 previous assembly 12X (GCF_000003745.3) 4 NC_012010.3 (17203399..17213452, complement)

    Chromosome 4 - NC_081808.1Genomic Context describing neighboring genes Neighboring gene membrane-associated protein VIPP1, chloroplastic Neighboring gene protein TIC 20-II, chloroplastic-like Neighboring gene uncharacterized LOC100259825 Neighboring gene calreticulin-3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100254714
    Names
    putative RNA-binding protein Luc7-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081808.1 Reference ASM3070453v1 Primary Assembly

      Range
      18667368..18677228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002276655.4 → XP_002276691.1  uncharacterized protein LOC100254714 isoform X2

      See identical proteins and their annotated locations for XP_002276691.1

      UniProtKB/TrEMBL
      D7SPM7
      Conserved Domains (2) summary
      COG5200
      Location:5 → 321
      LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
      pfam03194
      Location:2 → 327
      LUC7; LUC7 N_terminus

    2. XM_059736378.1 → XP_059592361.1  uncharacterized protein LOC100254714 isoform X1

    3. XM_059736379.1 → XP_059592362.1  uncharacterized protein LOC100254714 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials