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    LOC100254328 axial regulator YABBY 5 [ Vitis vinifera (wine grape) ]

    Gene ID: 100254328, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100254328
    Gene description
    axial regulator YABBY 5
    Locus tag
    VIT_00015567001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100254328 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 11 NC_081815.1 (4990079..4993925)
    102 previous assembly 12X (GCF_000003745.3) 11 NC_012017.3 (5013872..5017632)

    Chromosome 11 - NC_081815.1Genomic Context describing neighboring genes Neighboring gene methyl-CpG-binding domain-containing protein 11 Neighboring gene uncharacterized mitochondrial protein AtMg00860-like Neighboring gene BRAP2 RING ZnF UBP domain-containing protein 1 Neighboring gene elongation factor Ts, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in abaxial cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    axial regulator YABBY 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081815.1 Reference ASM3070453v1 Primary Assembly

      Range
      4990079..4993925
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002285292.5 → XP_002285328.1  axial regulator YABBY 5

      See identical proteins and their annotated locations for XP_002285328.1

      UniProtKB/TrEMBL
      A5BDZ6, D7TC40
      Conserved Domains (1) summary
      pfam04690
      Location:7 → 158
      YABBY; YABBY protein
    Nucleotide Protein
    Heading Accession and Version

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