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    LOC100253998 uncharacterized LOC100253998 [ Vitis vinifera (wine grape) ]

    Gene ID: 100253998, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100253998
    Gene description
    uncharacterized LOC100253998
    Locus tag
    VIT_00010051001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100253998 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (13766442..13773438)
    102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (13848120..13855108)

    Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene endoglucanase 25 Neighboring gene glycolipid transfer protein 3 Neighboring gene LRR receptor-like serine/threonine-protein kinase RGI2 Neighboring gene uncharacterized LOC132253072 Neighboring gene dof zinc finger protein DOF3.5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables antioxidant activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100253998

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

      Range
      13766442..13773438
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002277984.5 → XP_002278020.1  uncharacterized protein LOC100253998 isoform X2

      UniProtKB/TrEMBL
      F6H0A8
      Conserved Domains (2) summary
      cd02969
      Location:69 → 244
      PRX_like1; Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic ...
      pfam00578
      Location:68 → 189
      AhpC-TSA; AhpC/TSA family

    2. XM_019216627.2 → XP_019072172.1  uncharacterized protein LOC100253998 isoform X1

    RNA

    1. XR_788334.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials