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    LOC100252244 psbP domain-containing protein 4, chloroplastic [ Vitis vinifera (wine grape) ]

    Gene ID: 100252244, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100252244
    Gene description
    psbP domain-containing protein 4, chloroplastic
    Locus tag
    VIT_00010018001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100252244 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (13413625..13416566, complement)
    102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (13494966..13497880, complement)

    Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene bidirectional sugar transporter SWEET1 Neighboring gene pentatricopeptide repeat-containing protein At3g21470 Neighboring gene pentatricopeptide repeat-containing protein At3g21470 Neighboring gene probable beta-1,4-xylosyltransferase IRX10 Neighboring gene peroxidase 43

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem II oxygen evolving complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    psbP domain-containing protein 4, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

      Range
      13413625..13416566 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002265659.5 → XP_002265695.1  psbP domain-containing protein 4, chloroplastic isoform X1

      See identical proteins and their annotated locations for XP_002265695.1

      UniProtKB/TrEMBL
      A0A438DAV2, E0CQM8
      Conserved Domains (1) summary
      PLN00066
      Location:9 → 279
      PLN00066; PsbP domain-containing protein 4; Provisional

    2. XM_019216855.2 → XP_019072400.1  psbP domain-containing protein 4, chloroplastic isoform X2

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials